ZNF208.H13INVIVO.0.SGI.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF208.H13INVIVO.0.SGI.D
Gene (human)	ZNF208 (GeneCards)
Gene synonyms (human)	ZNF91L
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	vMCKWRCCCTAAWhn
GC content	46.78%
Information content (bits; total / per base)	15.616 / 1.041
Data sources	HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	302
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 3 experiments	median	0.982	0.969	0.912	0.896	0.769	0.775
GFPIVT, 3 experiments	best	0.998	0.997	0.991	0.988	0.941	0.934

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 3 experiments	median	58.824	0.514	0.606	0.479
GFPIVT, 3 experiments	best	110.678	0.695	0.708	0.596

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 3 experiments	median	0.679	0.635	0.622	0.6	0.582	0.577
Overall, 3 experiments	best	0.683	0.701	0.638	0.617	0.607	0.578

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.234
HGNC	HGNC:12999
MGI
EntrezGene (human)	GeneID:7757 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN208_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O43345 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
Genomic HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
SMiLE-Seq	3
PBM	0

PCM	ZNF208.H13INVIVO.0.SGI.D.pcm
PWM	ZNF208.H13INVIVO.0.SGI.D.pwm
PFM	ZNF208.H13INVIVO.0.SGI.D.pfm
Threshold to P-value map	ZNF208.H13INVIVO.0.SGI.D.thr
Motif in other formats
JASPAR format	ZNF208.H13INVIVO.0.SGI.D_jaspar_format.txt
MEME format	ZNF208.H13INVIVO.0.SGI.D_meme_format.meme
Transfac format	ZNF208.H13INVIVO.0.SGI.D_transfac_format.txt
Homer format	ZNF208.H13INVIVO.0.SGI.D_homer_format_0.001.txt ZNF208.H13INVIVO.0.SGI.D_homer_format_0.0005.txt ZNF208.H13INVIVO.0.SGI.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	50.0	114.0	92.0	46.0
02	213.75	48.75	18.75	20.75
03	0.0	301.0	0.0	1.0
04	1.0	1.0	171.0	129.0
05	220.0	14.0	19.0	49.0
06	188.0	0.0	107.0	7.0
07	24.0	266.0	0.0	12.0
08	1.0	301.0	0.0	0.0
09	0.0	165.0	137.0	0.0
10	1.0	48.0	0.0	253.0
11	297.0	5.0	0.0	0.0
12	302.0	0.0	0.0	0.0
13	114.0	53.0	3.0	132.0
14	56.25	93.25	34.25	118.25
15	70.5	74.5	52.5	104.5

PFM

	A	C	G	T
01	0.166	0.377	0.305	0.152
02	0.708	0.161	0.062	0.069
03	0.0	0.997	0.0	0.003
04	0.003	0.003	0.566	0.427
05	0.728	0.046	0.063	0.162
06	0.623	0.0	0.354	0.023
07	0.079	0.881	0.0	0.04
08	0.003	0.997	0.0	0.0
09	0.0	0.546	0.454	0.0
10	0.003	0.159	0.0	0.838
11	0.983	0.017	0.0	0.0
12	1.0	0.0	0.0	0.0
13	0.377	0.175	0.01	0.437
14	0.186	0.309	0.113	0.392
15	0.233	0.247	0.174	0.346

PWM

	A	C	G	T
01	-0.403	0.406	0.194	-0.484
02	1.029	-0.427	-1.338	-1.244
03	-3.987	1.369	-3.987	-3.456
04	-3.456	-3.456	0.807	0.528
05	1.057	-1.607	-1.326	-0.422
06	0.901	-3.987	0.343	-2.211
07	-1.107	1.246	-3.987	-1.746
08	-3.456	1.369	-3.987	-3.987
09	-3.987	0.772	0.587	-3.987
10	-3.456	-0.442	-3.987	1.196
11	1.356	-2.482	-3.987	-3.987
12	1.372	-3.987	-3.987	-3.987
13	0.406	-0.346	-2.855	0.551
14	-0.288	0.208	-0.768	0.442
15	-0.067	-0.013	-0.355	0.32

Standard thresholds

P-value	Threshold
0.001	2.49106
0.0005	3.79776
0.0001	6.47806