ZNF215.H13RSNP.0.PSG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF215.H13RSNP.0.PSG.D
Gene (human)	ZNF215 (GeneCards)
Gene synonyms (human)	BAZ2, ZKSCAN11
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	11
Consensus	SYGCGCCTSCh
GC content	74.87%
Information content (bits; total / per base)	13.05 / 1.186
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.762	0.777	0.628	0.651	0.718	0.742	43.942	50.538

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.981	0.968	0.954	0.936	0.842	0.836
GFPIVT, 1 experiments	best	0.981	0.968	0.954	0.936	0.842	0.836

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	97.959	0.789	0.817	0.683
GFPIVT, 1 experiments	best	265.538	0.835	0.864	0.729

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.18
HGNC	HGNC:13007
MGI
EntrezGene (human)	GeneID:7762 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN215_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9UL58 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF215.H13RSNP.0.PSG.D.pcm
PWM	ZNF215.H13RSNP.0.PSG.D.pwm
PFM	ZNF215.H13RSNP.0.PSG.D.pfm
Threshold to P-value map	ZNF215.H13RSNP.0.PSG.D.thr
Motif in other formats
JASPAR format	ZNF215.H13RSNP.0.PSG.D_jaspar_format.txt
MEME format	ZNF215.H13RSNP.0.PSG.D_meme_format.meme
Transfac format	ZNF215.H13RSNP.0.PSG.D_transfac_format.txt
Homer format	ZNF215.H13RSNP.0.PSG.D_homer_format_0.001.txt ZNF215.H13RSNP.0.PSG.D_homer_format_0.0005.txt ZNF215.H13RSNP.0.PSG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	21.0	305.0	150.0	24.0
02	85.0	249.0	7.0	159.0
03	3.0	12.0	485.0	0.0
04	8.0	475.0	0.0	17.0
05	186.0	0.0	313.0	1.0
06	1.0	409.0	90.0	0.0
07	1.0	496.0	0.0	3.0
08	1.0	3.0	0.0	496.0
09	71.0	309.0	97.0	23.0
10	9.0	481.0	2.0	8.0
11	82.0	158.0	77.0	183.0

PFM

	A	C	G	T
01	0.042	0.61	0.3	0.048
02	0.17	0.498	0.014	0.318
03	0.006	0.024	0.97	0.0
04	0.016	0.95	0.0	0.034
05	0.372	0.0	0.626	0.002
06	0.002	0.818	0.18	0.0
07	0.002	0.992	0.0	0.006
08	0.002	0.006	0.0	0.992
09	0.142	0.618	0.194	0.046
10	0.018	0.962	0.004	0.016
11	0.164	0.316	0.154	0.366

PWM

	A	C	G	T
01	-1.725	0.885	0.18	-1.6
02	-0.38	0.683	-2.694	0.238
03	-3.325	-2.234	1.347	-4.4
04	-2.584	1.326	-4.4	-1.92
05	0.393	-4.4	0.91	-3.903
06	-3.903	1.177	-0.324	-4.4
07	-3.903	1.369	-4.4	-3.325
08	-3.903	-3.325	-4.4	1.369
09	-0.556	0.898	-0.25	-1.64
10	-2.484	1.338	-3.573	-2.584
11	-0.415	0.232	-0.477	0.377

Standard thresholds

P-value	Threshold
0.001	3.63034
0.0005	4.74832
0.0001	7.11979