ZNF226.H13RSNP.0.PSGI.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF226.H13RSNP.0.PSGI.D
Gene (human)	ZNF226 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	RYnhGATAAATdGGMAWhMKh
GC content	40.02%
Information content (bits; total / per base)	20.178 / 0.961
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	8258
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (2)	0.722	0.733	0.708	0.725	0.709	0.721	28.336	38.215

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.941	0.945	0.841	0.855	0.787	0.804
GFPIVT, 2 experiments	best	1.0	1.0	1.0	1.0	0.986	0.986

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	433.441	0.811	0.826	0.817
GFPIVT, 2 experiments	best	507.921	0.816	0.865	0.847

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.696	0.681	0.593	0.599	0.543	0.557
Overall, 1 experiments	best	0.696	0.681	0.593	0.599	0.543	0.557

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF222-like {2.3.3.47} (TFClass)
TFClass ID	TFClass: 2.3.3.47.13
HGNC	HGNC:13019
MGI
EntrezGene (human)	GeneID:7769 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN226_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9NYT6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZNF226.H13RSNP.0.PSGI.D.pcm
PWM	ZNF226.H13RSNP.0.PSGI.D.pwm
PFM	ZNF226.H13RSNP.0.PSGI.D.pfm
Threshold to P-value map	ZNF226.H13RSNP.0.PSGI.D.thr
Motif in other formats
JASPAR format	ZNF226.H13RSNP.0.PSGI.D_jaspar_format.txt
MEME format	ZNF226.H13RSNP.0.PSGI.D_meme_format.meme
Transfac format	ZNF226.H13RSNP.0.PSGI.D_transfac_format.txt
Homer format	ZNF226.H13RSNP.0.PSGI.D_homer_format_0.001.txt ZNF226.H13RSNP.0.PSGI.D_homer_format_0.0005.txt ZNF226.H13RSNP.0.PSGI.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	4342.0	213.0	3554.0	149.0
02	488.75	1259.75	496.75	6012.75
03	2501.0	1208.0	2806.0	1743.0
04	4207.0	1361.0	865.0	1825.0
05	154.0	256.0	7696.0	152.0
06	7658.0	226.0	222.0	152.0
07	126.0	191.0	94.0	7847.0
08	7599.0	120.0	124.0	415.0
09	7435.0	193.0	536.0	94.0
10	7380.0	90.0	412.0	376.0
11	134.0	263.0	1458.0	6403.0
12	3758.0	216.0	2816.0	1468.0
13	99.0	12.0	8137.0	10.0
14	76.0	55.0	8003.0	124.0
15	2332.0	4897.0	347.0	682.0
16	7528.0	72.0	578.0	80.0
17	4535.0	730.0	297.0	2696.0
18	2385.0	2812.0	791.0	2270.0
19	879.0	6561.0	533.0	285.0
20	930.25	562.25	5484.25	1281.25
21	1718.5	1834.5	1015.5	3689.5

PFM

	A	C	G	T
01	0.526	0.026	0.43	0.018
02	0.059	0.153	0.06	0.728
03	0.303	0.146	0.34	0.211
04	0.509	0.165	0.105	0.221
05	0.019	0.031	0.932	0.018
06	0.927	0.027	0.027	0.018
07	0.015	0.023	0.011	0.95
08	0.92	0.015	0.015	0.05
09	0.9	0.023	0.065	0.011
10	0.894	0.011	0.05	0.046
11	0.016	0.032	0.177	0.775
12	0.455	0.026	0.341	0.178
13	0.012	0.001	0.985	0.001
14	0.009	0.007	0.969	0.015
15	0.282	0.593	0.042	0.083
16	0.912	0.009	0.07	0.01
17	0.549	0.088	0.036	0.326
18	0.289	0.341	0.096	0.275
19	0.106	0.795	0.065	0.035
20	0.113	0.068	0.664	0.155
21	0.208	0.222	0.123	0.447

PWM

	A	C	G	T
01	0.743	-2.262	0.543	-2.615
02	-1.437	-0.493	-1.421	1.068
03	0.192	-0.535	0.307	-0.169
04	0.711	-0.416	-0.868	-0.123
05	-2.582	-2.08	1.315	-2.595
06	1.31	-2.203	-2.221	-2.595
07	-2.78	-2.37	-3.067	1.334
08	1.302	-2.828	-2.795	-1.6
09	1.281	-2.359	-1.345	-3.067
10	1.273	-3.109	-1.607	-1.698
11	-2.719	-2.053	-0.347	1.131
12	0.599	-2.248	0.31	-0.341
13	-3.016	-4.977	1.371	-5.128
14	-3.274	-3.586	1.354	-2.795
15	0.122	0.863	-1.778	-1.105
16	1.293	-3.326	-1.27	-3.224
17	0.786	-1.038	-1.932	0.267
18	0.144	0.309	-0.958	0.095
19	-0.852	1.156	-1.351	-1.973
20	-0.796	-1.298	0.976	-0.476
21	-0.183	-0.118	-0.708	0.58

Standard thresholds

P-value	Threshold
0.001	0.52531
0.0005	1.89111
0.0001	4.79331