ZNF229.H13INVIVO.0.SG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF229.H13INVIVO.0.SG.D
Gene (human)	ZNF229 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	16
Consensus	nvACCTTCAGYRAARn
GC content	45.23%
Information content (bits; total / per base)	19.901 / 1.244
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	2131
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.999	0.999	0.977	0.976	0.8	0.828
GFPIVT, 1 experiments	best	0.999	0.999	0.977	0.976	0.8	0.828

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	373.959	0.748	0.749	0.731
GFPIVT, 1 experiments	best	375.0	0.755	0.769	0.752

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF222-like {2.3.3.47} (TFClass)
TFClass ID	TFClass: 2.3.3.47.11
HGNC	HGNC:13022
MGI
EntrezGene (human)	GeneID:7772 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN229_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9UJW7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF229.H13INVIVO.0.SG.D.pcm
PWM	ZNF229.H13INVIVO.0.SG.D.pwm
PFM	ZNF229.H13INVIVO.0.SG.D.pfm
Threshold to P-value map	ZNF229.H13INVIVO.0.SG.D.thr
Motif in other formats
JASPAR format	ZNF229.H13INVIVO.0.SG.D_jaspar_format.txt
MEME format	ZNF229.H13INVIVO.0.SG.D_meme_format.meme
Transfac format	ZNF229.H13INVIVO.0.SG.D_transfac_format.txt
Homer format	ZNF229.H13INVIVO.0.SG.D_homer_format_0.001.txt ZNF229.H13INVIVO.0.SG.D_homer_format_0.0005.txt ZNF229.H13INVIVO.0.SG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	439.5	759.5	379.5	552.5
02	519.5	463.5	885.5	262.5
03	1931.0	35.0	54.0	111.0
04	20.0	1947.0	9.0	155.0
05	71.0	2009.0	48.0	3.0
06	3.0	64.0	1.0	2063.0
07	1.0	2.0	2.0	2126.0
08	63.0	2067.0	0.0	1.0
09	2127.0	1.0	2.0	1.0
10	1.0	1.0	2125.0	4.0
11	2.0	953.0	49.0	1127.0
12	1098.0	10.0	861.0	162.0
13	2011.0	42.0	4.0	74.0
14	2075.0	20.0	9.0	27.0
15	512.25	166.25	1418.25	34.25
16	476.5	469.5	563.5	621.5

PFM

	A	C	G	T
01	0.206	0.356	0.178	0.259
02	0.244	0.218	0.416	0.123
03	0.906	0.016	0.025	0.052
04	0.009	0.914	0.004	0.073
05	0.033	0.943	0.023	0.001
06	0.001	0.03	0.0	0.968
07	0.0	0.001	0.001	0.998
08	0.03	0.97	0.0	0.0
09	0.998	0.0	0.001	0.0
10	0.0	0.0	0.997	0.002
11	0.001	0.447	0.023	0.529
12	0.515	0.005	0.404	0.076
13	0.944	0.02	0.002	0.035
14	0.974	0.009	0.004	0.013
15	0.24	0.078	0.666	0.016
16	0.224	0.22	0.264	0.292

PWM

	A	C	G	T
01	-0.192	0.354	-0.338	0.036
02	-0.025	-0.139	0.507	-0.704
03	1.285	-2.673	-2.258	-1.555
04	-3.194	1.293	-3.891	-1.226
05	-1.992	1.325	-2.371	-4.689
06	-4.689	-2.093	-5.211	1.351
07	-5.211	-4.917	-4.917	1.381
08	-2.109	1.353	-5.631	-5.211
09	1.382	-5.211	-4.917	-5.211
10	-5.211	-5.211	1.381	-4.504
11	-4.917	0.58	-2.351	0.747
12	0.721	-3.804	0.479	-1.182
13	1.326	-2.499	-4.504	-1.952
14	1.357	-3.194	-3.891	-2.917
15	-0.039	-1.157	0.977	-2.694
16	-0.111	-0.126	0.056	0.154

Standard thresholds

P-value	Threshold
0.001	-1.35529
0.0005	0.32531
0.0001	3.87006