ZNF233.H13CORE.0.PG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF233.H13CORE.0.PG.A
Gene (human)	ZNF233 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	25
Consensus	AWRGMhRAAMAAAAGGMAGCAGARA
GC content	42.04%
Information content (bits; total / per base)	27.382 / 1.095
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	200
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.743	0.743	0.754	0.754	0.823	0.823	54.409	54.409

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	113.0	0.914	0.917	0.823
GFPIVT, 2 experiments	best	182.824	0.945	0.954	0.861

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF214-like {2.3.3.56} (TFClass)
TFClass ID	TFClass: 2.3.3.56.3
HGNC	HGNC:30946
MGI
EntrezGene (human)	GeneID:353355 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN233_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A6NK53 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF233.H13CORE.0.PG.A.pcm
PWM	ZNF233.H13CORE.0.PG.A.pwm
PFM	ZNF233.H13CORE.0.PG.A.pfm
Threshold to P-value map	ZNF233.H13CORE.0.PG.A.thr
Motif in other formats
JASPAR format	ZNF233.H13CORE.0.PG.A_jaspar_format.txt
MEME format	ZNF233.H13CORE.0.PG.A_meme_format.meme
Transfac format	ZNF233.H13CORE.0.PG.A_transfac_format.txt
Homer format	ZNF233.H13CORE.0.PG.A_homer_format_0.001.txt ZNF233.H13CORE.0.PG.A_homer_format_0.0005.txt ZNF233.H13CORE.0.PG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	176.0	5.0	13.0	6.0
02	23.0	16.0	17.0	144.0
03	158.0	11.0	21.0	10.0
04	18.0	8.0	169.0	5.0
05	27.0	148.0	13.0	12.0
06	36.0	103.0	21.0	40.0
07	103.0	7.0	86.0	4.0
08	158.0	12.0	25.0	5.0
09	177.0	2.0	18.0	3.0
10	28.0	132.0	27.0	13.0
11	176.0	4.0	13.0	7.0
12	164.0	1.0	32.0	3.0
13	179.0	3.0	16.0	2.0
14	174.0	8.0	14.0	4.0
15	19.0	2.0	176.0	3.0
16	11.0	1.0	186.0	2.0
17	47.0	145.0	7.0	1.0
18	182.0	0.0	9.0	9.0
19	9.0	1.0	182.0	8.0
20	15.0	161.0	18.0	6.0
21	178.0	5.0	9.0	8.0
22	35.0	4.0	158.0	3.0
23	161.0	7.0	26.0	6.0
24	155.0	19.0	24.0	2.0
25	171.0	4.0	13.0	12.0

PFM

	A	C	G	T
01	0.88	0.025	0.065	0.03
02	0.115	0.08	0.085	0.72
03	0.79	0.055	0.105	0.05
04	0.09	0.04	0.845	0.025
05	0.135	0.74	0.065	0.06
06	0.18	0.515	0.105	0.2
07	0.515	0.035	0.43	0.02
08	0.79	0.06	0.125	0.025
09	0.885	0.01	0.09	0.015
10	0.14	0.66	0.135	0.065
11	0.88	0.02	0.065	0.035
12	0.82	0.005	0.16	0.015
13	0.895	0.015	0.08	0.01
14	0.87	0.04	0.07	0.02
15	0.095	0.01	0.88	0.015
16	0.055	0.005	0.93	0.01
17	0.235	0.725	0.035	0.005
18	0.91	0.0	0.045	0.045
19	0.045	0.005	0.91	0.04
20	0.075	0.805	0.09	0.03
21	0.89	0.025	0.045	0.04
22	0.175	0.02	0.79	0.015
23	0.805	0.035	0.13	0.03
24	0.775	0.095	0.12	0.01
25	0.855	0.02	0.065	0.06

PWM

	A	C	G	T
01	1.24	-2.094	-1.276	-1.947
02	-0.747	-1.086	-1.03	1.041
03	1.133	-1.427	-0.832	-1.511
04	-0.977	-1.706	1.2	-2.094
05	-0.594	1.068	-1.276	-1.349
06	-0.319	0.709	-0.832	-0.217
07	0.709	-1.819	0.531	-2.266
08	1.133	-1.349	-0.668	-2.094
09	1.245	-2.737	-0.977	-2.474
10	-0.56	0.955	-0.594	-1.276
11	1.24	-2.266	-1.276	-1.819
12	1.17	-3.095	-0.432	-2.474
13	1.257	-2.474	-1.086	-2.737
14	1.228	-1.706	-1.209	-2.266
15	-0.926	-2.737	1.24	-2.474
16	-1.427	-3.095	1.295	-2.737
17	-0.06	1.048	-1.819	-3.095
18	1.273	-3.657	-1.604	-1.604
19	-1.604	-3.095	1.273	-1.706
20	-1.145	1.151	-0.977	-1.947
21	1.251	-2.094	-1.604	-1.706
22	-0.346	-2.266	1.133	-2.474
23	1.151	-1.819	-0.63	-1.947
24	1.114	-0.926	-0.706	-2.737
25	1.211	-2.266	-1.276	-1.349

Standard thresholds

P-value	Threshold
0.001	-1.24129
0.0005	0.16521
0.0001	3.18761