ZNF233.H13INVITRO.0.PG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF233.H13INVITRO.0.PG.A
Gene (human)	ZNF233 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	15
Consensus	AGGAAGGAAGGAAGG
GC content	53.33%
Information content (bits; total / per base)	29.29 / 1.953
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.523	0.523	0.395	0.395	0.541	0.541	2.377	2.377

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	318.569	0.941	0.941	0.936
GFPIVT, 2 experiments	best	421.921	0.987	0.969	0.966

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF214-like {2.3.3.56} (TFClass)
TFClass ID	TFClass: 2.3.3.56.3
HGNC	HGNC:30946
MGI
EntrezGene (human)	GeneID:353355 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN233_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A6NK53 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF233.H13INVITRO.0.PG.A.pcm
PWM	ZNF233.H13INVITRO.0.PG.A.pwm
PFM	ZNF233.H13INVITRO.0.PG.A.pfm
Threshold to P-value map	ZNF233.H13INVITRO.0.PG.A.thr
Motif in other formats
JASPAR format	ZNF233.H13INVITRO.0.PG.A_jaspar_format.txt
MEME format	ZNF233.H13INVITRO.0.PG.A_meme_format.meme
Transfac format	ZNF233.H13INVITRO.0.PG.A_transfac_format.txt
Homer format	ZNF233.H13INVITRO.0.PG.A_homer_format_0.001.txt ZNF233.H13INVITRO.0.PG.A_homer_format_0.0005.txt ZNF233.H13INVITRO.0.PG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	500.0	0.0	0.0	0.0
02	0.0	0.0	500.0	0.0
03	0.0	0.0	500.0	0.0
04	500.0	0.0	0.0	0.0
05	500.0	0.0	0.0	0.0
06	0.0	0.0	500.0	0.0
07	0.0	0.0	500.0	0.0
08	500.0	0.0	0.0	0.0
09	500.0	0.0	0.0	0.0
10	0.0	0.0	500.0	0.0
11	0.0	0.0	500.0	0.0
12	500.0	0.0	0.0	0.0
13	500.0	0.0	0.0	0.0
14	0.0	0.0	500.0	0.0
15	0.0	97.0	403.0	0.0

PFM

	A	C	G	T
01	1.0	0.0	0.0	0.0
02	0.0	0.0	1.0	0.0
03	0.0	0.0	1.0	0.0
04	1.0	0.0	0.0	0.0
05	1.0	0.0	0.0	0.0
06	0.0	0.0	1.0	0.0
07	0.0	0.0	1.0	0.0
08	1.0	0.0	0.0	0.0
09	1.0	0.0	0.0	0.0
10	0.0	0.0	1.0	0.0
11	0.0	0.0	1.0	0.0
12	1.0	0.0	0.0	0.0
13	1.0	0.0	0.0	0.0
14	0.0	0.0	1.0	0.0
15	0.0	0.194	0.806	0.0

PWM

	A	C	G	T
01	1.377	-4.4	-4.4	-4.4
02	-4.4	-4.4	1.377	-4.4
03	-4.4	-4.4	1.377	-4.4
04	1.377	-4.4	-4.4	-4.4
05	1.377	-4.4	-4.4	-4.4
06	-4.4	-4.4	1.377	-4.4
07	-4.4	-4.4	1.377	-4.4
08	1.377	-4.4	-4.4	-4.4
09	1.377	-4.4	-4.4	-4.4
10	-4.4	-4.4	1.377	-4.4
11	-4.4	-4.4	1.377	-4.4
12	1.377	-4.4	-4.4	-4.4
13	1.377	-4.4	-4.4	-4.4
14	-4.4	-4.4	1.377	-4.4
15	-4.4	-0.25	1.162	-4.4

Standard thresholds

P-value	Threshold
0.001	-11.65299
0.0005	-9.068645
0.0001	-3.291545