ZNF234.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF234.H13INVIVO.0.PSG.A
Gene (human)	ZNF234 (GeneCards)
Gene synonyms (human)	ZNF269
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	25
Consensus	hYRAdAWdRdWAhAYYdRnhRMWWY
GC content	31.81%
Information content (bits; total / per base)	15.504 / 0.62
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	127
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (3)	0.789	0.809	0.767	0.77	0.875	0.879	31.658	63.0

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.474	0.488	0.485	0.491	0.492	0.494
GFPIVT, 1 experiments	best	0.474	0.488	0.485	0.491	0.492	0.494

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	0.0	0.441	0.376	0.308
GFPIVT, 1 experiments	best	1.796	0.47	0.416	0.345

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF222-like {2.3.3.47} (TFClass)
TFClass ID	TFClass: 2.3.3.47.14
HGNC	HGNC:13027
MGI
EntrezGene (human)	GeneID:10780 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN234_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q14588 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF234.H13INVIVO.0.PSG.A.pcm
PWM	ZNF234.H13INVIVO.0.PSG.A.pwm
PFM	ZNF234.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF234.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF234.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF234.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF234.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF234.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF234.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF234.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	34.0	15.0	9.0	69.0
02	12.0	24.0	2.0	89.0
03	78.0	3.0	42.0	4.0
04	103.0	5.0	12.0	7.0
05	19.0	10.0	65.0	33.0
06	73.0	0.0	54.0	0.0
07	74.0	6.0	13.0	34.0
08	71.0	7.0	22.0	27.0
09	81.0	2.0	30.0	14.0
10	52.0	8.0	16.0	51.0
11	35.0	1.0	7.0	84.0
12	114.0	0.0	13.0	0.0
13	16.0	32.0	12.0	67.0
14	112.0	2.0	4.0	9.0
15	11.0	83.0	6.0	27.0
16	8.0	46.0	1.0	72.0
17	42.0	12.0	40.0	33.0
18	29.0	3.0	72.0	23.0
19	32.0	48.0	15.0	32.0
20	71.0	31.0	12.0	13.0
21	65.0	5.0	48.0	9.0
22	70.0	48.0	1.0	8.0
23	80.0	3.0	5.0	39.0
24	86.0	10.0	12.0	19.0
25	14.0	82.0	11.0	20.0

PFM

	A	C	G	T
01	0.268	0.118	0.071	0.543
02	0.094	0.189	0.016	0.701
03	0.614	0.024	0.331	0.031
04	0.811	0.039	0.094	0.055
05	0.15	0.079	0.512	0.26
06	0.575	0.0	0.425	0.0
07	0.583	0.047	0.102	0.268
08	0.559	0.055	0.173	0.213
09	0.638	0.016	0.236	0.11
10	0.409	0.063	0.126	0.402
11	0.276	0.008	0.055	0.661
12	0.898	0.0	0.102	0.0
13	0.126	0.252	0.094	0.528
14	0.882	0.016	0.031	0.071
15	0.087	0.654	0.047	0.213
16	0.063	0.362	0.008	0.567
17	0.331	0.094	0.315	0.26
18	0.228	0.024	0.567	0.181
19	0.252	0.378	0.118	0.252
20	0.559	0.244	0.094	0.102
21	0.512	0.039	0.378	0.071
22	0.551	0.378	0.008	0.063
23	0.63	0.024	0.039	0.307
24	0.677	0.079	0.094	0.15
25	0.11	0.646	0.087	0.157

PWM

	A	C	G	T
01	0.066	-0.71	-1.172	0.756
02	-0.914	-0.268	-2.329	1.007
03	0.877	-2.058	0.271	-1.845
04	1.151	-1.669	-0.914	-1.39
05	-0.489	-1.078	0.698	0.037
06	0.812	-3.304	0.516	-3.304
07	0.825	-1.52	-0.841	0.066
08	0.784	-1.39	-0.351	-0.156
09	0.914	-2.329	-0.055	-0.773
10	0.479	-1.275	-0.65	0.46
11	0.094	-2.702	-1.39	0.95
12	1.251	-3.304	-0.841	-3.304
13	-0.65	0.008	-0.914	0.727
14	1.234	-2.329	-1.845	-1.172
15	-0.993	0.938	-1.52	-0.156
16	-1.275	0.359	-2.702	0.798
17	0.271	-0.914	0.223	0.037
18	-0.087	-2.058	0.798	-0.309
19	0.008	0.401	-0.71	0.008
20	0.784	-0.023	-0.914	-0.841
21	0.698	-1.669	0.401	-1.172
22	0.77	0.401	-2.702	-1.275
23	0.902	-2.058	-1.669	0.199
24	0.973	-1.078	-0.914	-0.489
25	-0.773	0.926	-0.993	-0.441

Standard thresholds

P-value	Threshold
0.001	3.62051
0.0005	4.62321
0.0001	6.73566