ZNF275.H13INVITRO.0.SG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF275.H13INVITRO.0.SG.A
Gene (human)	ZNF275 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	19
Consensus	dvGGTGCTAGGGdCbCnhn
GC content	62.71%
Information content (bits; total / per base)	21.402 / 1.126
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	9865
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	1.0	1.0	1.0	1.0	0.945	0.95
GFPIVT, 1 experiments	best	1.0	1.0	1.0	1.0	0.945	0.95

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	481.745	0.867	0.9	0.887
GFPIVT, 1 experiments	best	614.201	0.93	0.936	0.937

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.103
HGNC	HGNC:13069
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN275_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9NSD4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF275.H13INVITRO.0.SG.A.pcm
PWM	ZNF275.H13INVITRO.0.SG.A.pwm
PFM	ZNF275.H13INVITRO.0.SG.A.pfm
Threshold to P-value map	ZNF275.H13INVITRO.0.SG.A.thr
Motif in other formats
JASPAR format	ZNF275.H13INVITRO.0.SG.A_jaspar_format.txt
MEME format	ZNF275.H13INVITRO.0.SG.A_meme_format.meme
Transfac format	ZNF275.H13INVITRO.0.SG.A_transfac_format.txt
Homer format	ZNF275.H13INVITRO.0.SG.A_homer_format_0.001.txt ZNF275.H13INVITRO.0.SG.A_homer_format_0.0005.txt ZNF275.H13INVITRO.0.SG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	3051.75	1355.75	1992.75	3464.75
02	4664.75	2742.75	1335.75	1121.75
03	505.0	691.0	8620.0	49.0
04	139.0	8.0	9699.0	19.0
05	50.0	37.0	22.0	9756.0
06	33.0	9.0	9817.0	6.0
07	9.0	9808.0	2.0	46.0
08	59.0	1.0	4.0	9801.0
09	7265.0	82.0	45.0	2473.0
10	291.0	16.0	9483.0	75.0
11	26.0	4.0	9747.0	88.0
12	116.0	89.0	9283.0	377.0
13	4027.0	499.0	3037.0	2302.0
14	339.0	8869.0	355.0	302.0
15	708.0	5153.0	2626.0	1378.0
16	112.0	9404.0	93.0	256.0
17	3587.0	1949.0	2758.0	1571.0
18	1731.75	2407.75	1302.75	4422.75
19	2075.0	1789.0	2406.0	3595.0

PFM

	A	C	G	T
01	0.309	0.137	0.202	0.351
02	0.473	0.278	0.135	0.114
03	0.051	0.07	0.874	0.005
04	0.014	0.001	0.983	0.002
05	0.005	0.004	0.002	0.989
06	0.003	0.001	0.995	0.001
07	0.001	0.994	0.0	0.005
08	0.006	0.0	0.0	0.994
09	0.736	0.008	0.005	0.251
10	0.029	0.002	0.961	0.008
11	0.003	0.0	0.988	0.009
12	0.012	0.009	0.941	0.038
13	0.408	0.051	0.308	0.233
14	0.034	0.899	0.036	0.031
15	0.072	0.522	0.266	0.14
16	0.011	0.953	0.009	0.026
17	0.364	0.198	0.28	0.159
18	0.176	0.244	0.132	0.448
19	0.21	0.181	0.244	0.364

PWM

	A	C	G	T
01	0.213	-0.598	-0.213	0.34
02	0.637	0.106	-0.612	-0.787
03	-1.582	-1.27	1.251	-3.874
04	-2.861	-5.479	1.369	-4.753
05	-3.854	-4.14	-4.621	1.374
06	-4.248	-5.387	1.381	-5.695
07	-5.387	1.38	-6.353	-3.934
08	-3.696	-6.618	-5.971	1.379
09	1.08	-3.377	-3.955	0.003
10	-2.13	-4.905	1.346	-3.464
11	-4.469	-5.971	1.374	-3.308
12	-3.038	-3.297	1.325	-1.873
13	0.49	-1.594	0.208	-0.069
14	-1.979	1.279	-1.933	-2.093
15	-1.246	0.736	0.063	-0.581
16	-3.073	1.338	-3.254	-2.257
17	0.374	-0.235	0.112	-0.45
18	-0.353	-0.024	-0.637	0.584
19	-0.173	-0.321	-0.025	0.377

Standard thresholds

P-value	Threshold
0.001	-2.64754
0.0005	-0.87729
0.0001	2.86131