ZNF286B.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF286B.H13INVITRO.0.PSG.A
Gene (human)	ZNF286B (GeneCards)
Gene synonyms (human)	ZNF286C, ZNF286L
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	17
Consensus	hdGKAATGAGMYWMYMd
GC content	48.17%
Information content (bits; total / per base)	14.795 / 0.87
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	8387
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.952	0.952	0.943	0.943	0.955	0.955	59.745	59.745

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.95	0.952	0.855	0.865	0.763	0.782
GFPIVT, 2 experiments	best	1.0	1.0	1.0	0.999	0.915	0.926

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	631.119	0.954	0.976	0.97
GFPIVT, 1 experiments	best	912.222	0.974	0.982	0.973

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF286 {2.3.3.49} (TFClass)
TFClass ID	TFClass: 2.3.3.49.2
HGNC	HGNC:33241
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	Z286B_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P0CG31 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF286B.H13INVITRO.0.PSG.A.pcm
PWM	ZNF286B.H13INVITRO.0.PSG.A.pwm
PFM	ZNF286B.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF286B.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF286B.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF286B.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF286B.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF286B.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF286B.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF286B.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	4565.5	1251.5	1140.5	1429.5
02	2716.5	670.5	3944.5	1055.5
03	482.0	394.0	7106.0	405.0
04	309.0	292.0	1590.0	6196.0
05	7792.0	212.0	190.0	193.0
06	7891.0	251.0	120.0	125.0
07	76.0	1577.0	217.0	6517.0
08	170.0	69.0	8042.0	106.0
09	7773.0	203.0	157.0	254.0
10	264.0	305.0	7372.0	446.0
11	1328.0	5264.0	841.0	954.0
12	452.0	3320.0	410.0	4205.0
13	1987.0	901.0	504.0	4995.0
14	2542.0	4602.0	614.0	629.0
15	624.0	6536.0	492.0	735.0
16	1335.5	5262.5	778.5	1010.5
17	3429.75	838.75	3205.75	912.75

PFM

	A	C	G	T
01	0.544	0.149	0.136	0.17
02	0.324	0.08	0.47	0.126
03	0.057	0.047	0.847	0.048
04	0.037	0.035	0.19	0.739
05	0.929	0.025	0.023	0.023
06	0.941	0.03	0.014	0.015
07	0.009	0.188	0.026	0.777
08	0.02	0.008	0.959	0.013
09	0.927	0.024	0.019	0.03
10	0.031	0.036	0.879	0.053
11	0.158	0.628	0.1	0.114
12	0.054	0.396	0.049	0.501
13	0.237	0.107	0.06	0.596
14	0.303	0.549	0.073	0.075
15	0.074	0.779	0.059	0.088
16	0.159	0.627	0.093	0.12
17	0.409	0.1	0.382	0.109

PWM

	A	C	G	T
01	0.778	-0.515	-0.608	-0.383
02	0.259	-1.138	0.631	-0.685
03	-1.467	-1.667	1.22	-1.64
04	-1.909	-1.965	-0.276	1.083
05	1.312	-2.282	-2.39	-2.375
06	1.325	-2.115	-2.843	-2.803
07	-3.289	-0.285	-2.259	1.133
08	-2.5	-3.383	1.343	-2.965
09	1.309	-2.325	-2.579	-2.103
10	-2.065	-1.922	1.257	-1.544
11	-0.456	0.92	-0.912	-0.786
12	-1.531	0.459	-1.628	0.695
13	-0.054	-0.843	-1.422	0.867
14	0.192	0.786	-1.226	-1.202
15	-1.209	1.136	-1.446	-1.046
16	-0.45	0.92	-0.989	-0.729
17	0.492	-0.915	0.424	-0.83

Standard thresholds

P-value	Threshold
0.001	3.27801
0.0005	4.34086
0.0001	6.59011