ZNF292.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF292.H13INVITRO.0.PSG.A
Gene (human)	ZNF292 (GeneCards)
Gene synonyms (human)	KIAA0530
Gene (mouse)	Zfp292
Gene synonyms (mouse)	Zfp15
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	14
Consensus	dvRWGCATGYhWnn
GC content	46.8%
Information content (bits; total / per base)	12.998 / 0.928
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	741
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.6	0.644	0.394	0.43	0.447	0.452	0.0	0.0

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 3 experiments	median	0.953	0.93	0.877	0.851	0.764	0.753
overall, 3 experiments	best	0.996	0.993	0.993	0.989	0.985	0.979
IVT, 1 experiments	median	0.996	0.993	0.993	0.989	0.985	0.979
IVT, 1 experiments	best	0.996	0.993	0.993	0.989	0.985	0.979
GFPIVT, 2 experiments	median	0.823	0.773	0.781	0.732	0.71	0.677
GFPIVT, 2 experiments	best	0.953	0.93	0.877	0.851	0.764	0.753

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	0.921	0.499	0.72	0.541
overall, 3 experiments	best	205.319	0.645	0.898	0.756
IVT, 1 experiments	median	205.319	0.645	0.898	0.756
IVT, 1 experiments	best	205.319	0.645	0.898	0.756
GFPIVT, 2 experiments	median	0.607	0.451	0.649	0.477
GFPIVT, 2 experiments	best	24.125	0.559	0.814	0.64

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	RLF-like {2.3.4.7} (TFClass)
TFClass ID	TFClass: 2.3.4.7.2
HGNC	HGNC:18410
MGI	MGI:1353423
EntrezGene (human)	GeneID:23036 (SSTAR profile)
EntrezGene (mouse)	GeneID:30046 (SSTAR profile)
UniProt ID (human)	ZN292_HUMAN
UniProt ID (mouse)	ZN292_MOUSE
UniProt AC (human)	O60281 (TFClass)
UniProt AC (mouse)	Q9Z2U2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 1 IVT, 2 GFPIVT
Genomic HT-SELEX	3 overall: 0 Lysate, 1 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF292.H13INVITRO.0.PSG.A.pcm
PWM	ZNF292.H13INVITRO.0.PSG.A.pwm
PFM	ZNF292.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF292.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF292.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF292.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF292.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF292.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF292.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF292.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	241.0	88.0	240.0	172.0
02	184.75	407.75	88.75	59.75
03	454.0	87.0	139.0	61.0
04	337.0	60.0	19.0	325.0
05	8.0	2.0	729.0	2.0
06	0.0	741.0	0.0	0.0
07	727.0	14.0	0.0	0.0
08	0.0	0.0	0.0	741.0
09	0.0	0.0	741.0	0.0
10	10.0	311.0	0.0	420.0
11	119.0	335.0	18.0	269.0
12	459.0	86.0	69.0	127.0
13	139.5	188.5	195.5	217.5
14	216.0	150.0	146.0	229.0

PFM

	A	C	G	T
01	0.325	0.119	0.324	0.232
02	0.249	0.55	0.12	0.081
03	0.613	0.117	0.188	0.082
04	0.455	0.081	0.026	0.439
05	0.011	0.003	0.984	0.003
06	0.0	1.0	0.0	0.0
07	0.981	0.019	0.0	0.0
08	0.0	0.0	0.0	1.0
09	0.0	0.0	1.0	0.0
10	0.013	0.42	0.0	0.567
11	0.161	0.452	0.024	0.363
12	0.619	0.116	0.093	0.171
13	0.188	0.254	0.264	0.294
14	0.291	0.202	0.197	0.309

PWM

	A	C	G	T
01	0.261	-0.735	0.257	-0.074
02	-0.003	0.784	-0.726	-1.113
03	0.891	-0.746	-0.284	-1.093
04	0.594	-1.109	-2.203	0.558
05	-2.963	-3.935	1.363	-3.935
06	-4.729	1.38	-4.729	-4.729
07	1.361	-2.48	-4.729	-4.729
08	-4.729	-4.729	-4.729	1.38
09	-4.729	-4.729	1.38	-4.729
10	-2.775	0.515	-4.729	0.814
11	-0.438	0.588	-2.252	0.37
12	0.902	-0.757	-0.973	-0.373
13	-0.281	0.017	0.053	0.159
14	0.152	-0.209	-0.236	0.21

Standard thresholds

P-value	Threshold
0.001	3.22471
0.0005	4.47821
0.0001	7.41661