ZNF335.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF335.H13INVITRO.0.PSG.A
Gene (human)	ZNF335 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf335
Gene synonyms (mouse)	Zfp335
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	12
Consensus	bhKGGGTCCTbv
GC content	64.58%
Information content (bits; total / per base)	13.901 / 1.158
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	283
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.577	0.589	0.402	0.416	0.474	0.492	0.59	1.167

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 3 experiments	median	0.776	0.765	0.632	0.644	0.561	0.582
overall, 3 experiments	best	0.996	0.992	0.994	0.99	0.985	0.979
IVT, 1 experiments	median	0.776	0.765	0.632	0.644	0.561	0.582
IVT, 1 experiments	best	0.776	0.765	0.632	0.644	0.561	0.582
GFPIVT, 2 experiments	median	0.636	0.688	0.662	0.698	0.681	0.702
GFPIVT, 2 experiments	best	0.996	0.992	0.994	0.99	0.985	0.979

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	67.013	0.716	0.823	0.636
overall, 3 experiments	best	450.796	0.877	0.928	0.835
IVT, 1 experiments	median	81.824	0.844	0.871	0.78
IVT, 1 experiments	best	81.824	0.844	0.871	0.78
GFPIVT, 2 experiments	median	33.507	0.557	0.678	0.495
GFPIVT, 2 experiments	best	450.796	0.877	0.928	0.835

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.2
HGNC	HGNC:15807
MGI	MGI:2682313
EntrezGene (human)	GeneID:63925 (SSTAR profile)
EntrezGene (mouse)	GeneID:329559 (SSTAR profile)
UniProt ID (human)	ZN335_HUMAN
UniProt ID (mouse)	ZN335_MOUSE
UniProt AC (human)	Q9H4Z2 (TFClass)
UniProt AC (mouse)	A2A5K6 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 1 IVT, 2 GFPIVT
Genomic HT-SELEX	3 overall: 0 Lysate, 1 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF335.H13INVITRO.0.PSG.A.pcm
PWM	ZNF335.H13INVITRO.0.PSG.A.pwm
PFM	ZNF335.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF335.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF335.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF335.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF335.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF335.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF335.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF335.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	14.0	105.0	85.0	79.0
02	47.0	63.0	38.0	135.0
03	25.0	6.0	182.0	70.0
04	5.0	3.0	261.0	14.0
05	0.0	0.0	283.0	0.0
06	1.0	0.0	281.0	1.0
07	2.0	0.0	11.0	270.0
08	0.0	277.0	6.0	0.0
09	0.0	268.0	3.0	12.0
10	3.0	0.0	1.0	279.0
11	26.0	105.0	69.0	83.0
12	111.0	62.0	84.0	26.0

PFM

	A	C	G	T
01	0.049	0.371	0.3	0.279
02	0.166	0.223	0.134	0.477
03	0.088	0.021	0.643	0.247
04	0.018	0.011	0.922	0.049
05	0.0	0.0	1.0	0.0
06	0.004	0.0	0.993	0.004
07	0.007	0.0	0.039	0.954
08	0.0	0.979	0.021	0.0
09	0.0	0.947	0.011	0.042
10	0.011	0.0	0.004	0.986
11	0.092	0.371	0.244	0.293
12	0.392	0.219	0.297	0.092

PWM

	A	C	G	T
01	-1.544	0.388	0.18	0.108
02	-0.399	-0.114	-0.605	0.637
03	-1.005	-2.276	0.933	-0.01
04	-2.421	-2.795	1.291	-1.544
05	-3.934	-3.934	1.372	-3.934
06	-3.399	-3.934	1.364	-3.399
07	-3.052	-3.934	-1.76	1.325
08	-3.934	1.35	-2.276	-3.934
09	-3.934	1.317	-2.795	-1.683
10	-2.795	-3.934	-3.399	1.357
11	-0.968	0.388	-0.025	0.157
12	0.443	-0.129	0.169	-0.968

Standard thresholds

P-value	Threshold
0.001	3.349065
0.0005	4.60696
0.0001	6.877675