ZNF335.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF335.H13INVIVO.0.PSG.A
Gene (human)	ZNF335 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf335
Gene synonyms (mouse)	Zfp335
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	8
Consensus	vTGCCTGh
GC content	65.85%
Information content (bits; total / per base)	11.428 / 1.428
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.753	0.764	0.586	0.602	0.674	0.703	27.908	34.137

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 3 experiments	median	0.467	0.49	0.467	0.486	0.473	0.486
overall, 3 experiments	best	0.968	0.943	0.975	0.95	0.969	0.946
IVT, 1 experiments	median	0.467	0.49	0.467	0.486	0.473	0.486
IVT, 1 experiments	best	0.467	0.49	0.467	0.486	0.473	0.486
GFPIVT, 2 experiments	median	0.677	0.698	0.687	0.7	0.683	0.698
GFPIVT, 2 experiments	best	0.968	0.943	0.975	0.95	0.969	0.946

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	0.229	0.505	0.511	0.341
overall, 3 experiments	best	361.432	0.787	0.837	0.685
IVT, 1 experiments	median	0.0	0.411	0.475	0.331
IVT, 1 experiments	best	0.0	0.411	0.475	0.331
GFPIVT, 2 experiments	median	10.695	0.597	0.641	0.489
GFPIVT, 2 experiments	best	361.432	0.787	0.837	0.685

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.2
HGNC	HGNC:15807
MGI	MGI:2682313
EntrezGene (human)	GeneID:63925 (SSTAR profile)
EntrezGene (mouse)	GeneID:329559 (SSTAR profile)
UniProt ID (human)	ZN335_HUMAN
UniProt ID (mouse)	ZN335_MOUSE
UniProt AC (human)	Q9H4Z2 (TFClass)
UniProt AC (mouse)	A2A5K6 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 1 IVT, 2 GFPIVT
Genomic HT-SELEX	3 overall: 0 Lysate, 1 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF335.H13INVIVO.0.PSG.A.pcm
PWM	ZNF335.H13INVIVO.0.PSG.A.pwm
PFM	ZNF335.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF335.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF335.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF335.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF335.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF335.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF335.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF335.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	74.0	190.0	189.0	47.0
02	12.0	34.0	1.0	453.0
03	0.0	0.0	498.0	2.0
04	0.0	499.0	0.0	1.0
05	0.0	499.0	1.0	0.0
06	10.0	0.0	7.0	483.0
07	0.0	2.0	497.0	1.0
08	129.0	175.0	42.0	154.0

PFM

	A	C	G	T
01	0.148	0.38	0.378	0.094
02	0.024	0.068	0.002	0.906
03	0.0	0.0	0.996	0.004
04	0.0	0.998	0.0	0.002
05	0.0	0.998	0.002	0.0
06	0.02	0.0	0.014	0.966
07	0.0	0.004	0.994	0.002
08	0.258	0.35	0.084	0.308

PWM

	A	C	G	T
01	-0.516	0.415	0.409	-0.958
02	-2.234	-1.27	-3.903	1.279
03	-4.4	-4.4	1.373	-3.573
04	-4.4	1.375	-4.4	-3.903
05	-4.4	1.375	-3.903	-4.4
06	-2.394	-4.4	-2.694	1.343
07	-4.4	-3.573	1.371	-3.903
08	0.031	0.333	-1.067	0.206

Standard thresholds

P-value	Threshold
0.001	3.789615
0.0005	5.024415
0.0001	7.907095