ZNF347.H13CORE.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF347.H13CORE.0.PSGI.A
Gene (human)	ZNF347 (GeneCards)
Gene synonyms (human)	ZNF1111
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	24
Consensus	nvdWRdGGGATGCGAhRGGGAYRn
GC content	55.08%
Information content (bits; total / per base)	21.993 / 0.916
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	792
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (5)	0.924	0.967	0.84	0.938	0.809	0.952	60.292	252.796

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.996	0.995	0.909	0.916	0.784	0.807
GFPIVT, 2 experiments	best	0.999	0.999	0.987	0.984	0.918	0.913

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	398.889	0.884	0.902	0.794
GFPIVT, 2 experiments	best	584.538	0.914	0.918	0.812

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.833	0.827	0.666	0.683	0.572	0.603
Overall, 1 experiments	best	0.833	0.827	0.666	0.683	0.572	0.603

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF665-like {2.3.3.76} (TFClass)
TFClass ID	TFClass: 2.3.3.76.3
HGNC	HGNC:16447
MGI
EntrezGene (human)	GeneID:84671 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN347_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96SE7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZNF347.H13CORE.0.PSGI.A.pcm
PWM	ZNF347.H13CORE.0.PSGI.A.pwm
PFM	ZNF347.H13CORE.0.PSGI.A.pfm
Threshold to P-value map	ZNF347.H13CORE.0.PSGI.A.thr
Motif in other formats
JASPAR format	ZNF347.H13CORE.0.PSGI.A_jaspar_format.txt
MEME format	ZNF347.H13CORE.0.PSGI.A_meme_format.meme
Transfac format	ZNF347.H13CORE.0.PSGI.A_transfac_format.txt
Homer format	ZNF347.H13CORE.0.PSGI.A_homer_format_0.001.txt ZNF347.H13CORE.0.PSGI.A_homer_format_0.0005.txt ZNF347.H13CORE.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	281.25	157.25	195.25	158.25
02	269.25	104.25	318.25	100.25
03	443.0	79.0	138.0	132.0
04	492.0	85.0	88.0	127.0
05	558.0	12.0	161.0	61.0
06	217.0	19.0	375.0	181.0
07	28.0	1.0	761.0	2.0
08	21.0	0.0	770.0	1.0
09	29.0	1.0	745.0	17.0
10	664.0	14.0	56.0	58.0
11	42.0	132.0	7.0	611.0
12	36.0	5.0	637.0	114.0
13	78.0	667.0	25.0	22.0
14	61.0	0.0	729.0	2.0
15	763.0	15.0	4.0	10.0
16	295.0	175.0	93.0	229.0
17	473.0	17.0	201.0	101.0
18	52.0	8.0	705.0	27.0
19	17.0	20.0	747.0	8.0
20	70.0	11.0	694.0	17.0
21	654.0	30.0	58.0	50.0
22	53.0	409.0	45.0	285.0
23	213.25	46.25	449.25	83.25
24	202.75	243.75	216.75	128.75

PFM

	A	C	G	T
01	0.355	0.199	0.247	0.2
02	0.34	0.132	0.402	0.127
03	0.559	0.1	0.174	0.167
04	0.621	0.107	0.111	0.16
05	0.705	0.015	0.203	0.077
06	0.274	0.024	0.473	0.229
07	0.035	0.001	0.961	0.003
08	0.027	0.0	0.972	0.001
09	0.037	0.001	0.941	0.021
10	0.838	0.018	0.071	0.073
11	0.053	0.167	0.009	0.771
12	0.045	0.006	0.804	0.144
13	0.098	0.842	0.032	0.028
14	0.077	0.0	0.92	0.003
15	0.963	0.019	0.005	0.013
16	0.372	0.221	0.117	0.289
17	0.597	0.021	0.254	0.128
18	0.066	0.01	0.89	0.034
19	0.021	0.025	0.943	0.01
20	0.088	0.014	0.876	0.021
21	0.826	0.038	0.073	0.063
22	0.067	0.516	0.057	0.36
23	0.269	0.058	0.567	0.105
24	0.256	0.308	0.274	0.163

PWM

	A	C	G	T
01	0.349	-0.228	-0.014	-0.222
02	0.305	-0.634	0.471	-0.672
03	0.801	-0.906	-0.357	-0.401
04	0.905	-0.835	-0.801	-0.439
05	1.031	-2.682	-0.205	-1.159
06	0.091	-2.268	0.635	-0.089
07	-1.907	-4.315	1.34	-3.997
08	-2.176	-4.785	1.352	-4.315
09	-1.873	-4.315	1.319	-2.37
10	1.204	-2.545	-1.242	-1.208
11	-1.52	-0.401	-3.137	1.121
12	-1.668	-3.399	1.163	-0.546
13	-0.919	1.209	-2.013	-2.133
14	-1.159	-4.785	1.297	-3.997
15	1.343	-2.483	-3.562	-2.84
16	0.396	-0.122	-0.746	0.144
17	0.866	-2.37	0.015	-0.665
18	-1.314	-3.028	1.264	-1.941
19	-2.37	-2.221	1.322	-3.028
20	-1.025	-2.758	1.248	-2.37
21	1.189	-1.841	-1.208	-1.352
22	-1.295	0.721	-1.454	0.362
23	0.074	-1.427	0.815	-0.855
24	0.024	0.206	0.09	-0.426

Standard thresholds

P-value	Threshold
0.001	-0.12619
0.0005	1.29026
0.0001	4.29926