MotifZNF347.H13INVITRO.0.PSGI.A
Gene (human)ZNF347
(GeneCards)
Gene synonyms (human)ZNF1111
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length24
ConsensusnvdWRdGGGATGCGAhRGGGAYRn
GC content55.08%
Information content (bits; total / per base)21.993 / 0.916
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words792
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 3 (5) 0.924 0.967 0.84 0.938 0.809 0.952 60.292 252.796

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
GFPIVT, 2 experiments median 0.996 0.995 0.909 0.916 0.784 0.807
best 0.999 0.999 0.987 0.984 0.918 0.913

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
GFPIVT, 2 experiments median 398.889 0.884 0.902 0.794
best 584.538 0.914 0.918 0.812

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.833 0.827 0.666 0.683 0.572 0.603
best 0.833 0.827 0.666 0.683 0.572 0.603
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF665-like {2.3.3.76} (TFClass)
TFClass IDTFClass: 2.3.3.76.3
HGNCHGNC:16447
MGI
EntrezGene (human)GeneID:84671
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN347_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q96SE7
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 0 mouse
HT-SELEX 2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX 2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq 1
PBM 0
PCM
ACGT
01281.25157.25195.25158.25
02269.25104.25318.25100.25
03443.079.0138.0132.0
04492.085.088.0127.0
05558.012.0161.061.0
06217.019.0375.0181.0
0728.01.0761.02.0
0821.00.0770.01.0
0929.01.0745.017.0
10664.014.056.058.0
1142.0132.07.0611.0
1236.05.0637.0114.0
1378.0667.025.022.0
1461.00.0729.02.0
15763.015.04.010.0
16295.0175.093.0229.0
17473.017.0201.0101.0
1852.08.0705.027.0
1917.020.0747.08.0
2070.011.0694.017.0
21654.030.058.050.0
2253.0409.045.0285.0
23213.2546.25449.2583.25
24202.75243.75216.75128.75
PFM
ACGT
010.3550.1990.2470.2
020.340.1320.4020.127
030.5590.10.1740.167
040.6210.1070.1110.16
050.7050.0150.2030.077
060.2740.0240.4730.229
070.0350.0010.9610.003
080.0270.00.9720.001
090.0370.0010.9410.021
100.8380.0180.0710.073
110.0530.1670.0090.771
120.0450.0060.8040.144
130.0980.8420.0320.028
140.0770.00.920.003
150.9630.0190.0050.013
160.3720.2210.1170.289
170.5970.0210.2540.128
180.0660.010.890.034
190.0210.0250.9430.01
200.0880.0140.8760.021
210.8260.0380.0730.063
220.0670.5160.0570.36
230.2690.0580.5670.105
240.2560.3080.2740.163
PWM
ACGT
010.349-0.228-0.014-0.222
020.305-0.6340.471-0.672
030.801-0.906-0.357-0.401
040.905-0.835-0.801-0.439
051.031-2.682-0.205-1.159
060.091-2.2680.635-0.089
07-1.907-4.3151.34-3.997
08-2.176-4.7851.352-4.315
09-1.873-4.3151.319-2.37
101.204-2.545-1.242-1.208
11-1.52-0.401-3.1371.121
12-1.668-3.3991.163-0.546
13-0.9191.209-2.013-2.133
14-1.159-4.7851.297-3.997
151.343-2.483-3.562-2.84
160.396-0.122-0.7460.144
170.866-2.370.015-0.665
18-1.314-3.0281.264-1.941
19-2.37-2.2211.322-3.028
20-1.025-2.7581.248-2.37
211.189-1.841-1.208-1.352
22-1.2950.721-1.4540.362
230.074-1.4270.815-0.855
240.0240.2060.09-0.426
Standard thresholds
P-value Threshold
0.001 -0.12619
0.0005 1.29026
0.0001 4.29926