ZNF347.H13INVIVO.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF347.H13INVIVO.0.PSGI.A
Gene (human)	ZNF347 (GeneCards)
Gene synonyms (human)	ZNF1111
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	25
Consensus	GGARMKRGARRGGGGAWRRRRdRGG
GC content	59.51%
Information content (bits; total / per base)	25.17 / 1.007
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	982
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (5)	0.979	0.991	0.97	0.985	0.857	0.993	81.854	327.125

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.897	0.88	0.76	0.757	0.656	0.668
GFPIVT, 2 experiments	best	0.927	0.901	0.845	0.815	0.742	0.726

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	473.881	0.916	0.952	0.944
GFPIVT, 2 experiments	best	730.699	0.963	0.967	0.951

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.622	0.607	0.531	0.548	0.504	0.523
Overall, 1 experiments	best	0.622	0.607	0.531	0.548	0.504	0.523

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF665-like {2.3.3.76} (TFClass)
TFClass ID	TFClass: 2.3.3.76.3
HGNC	HGNC:16447
MGI
EntrezGene (human)	GeneID:84671 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN347_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96SE7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZNF347.H13INVIVO.0.PSGI.A.pcm
PWM	ZNF347.H13INVIVO.0.PSGI.A.pwm
PFM	ZNF347.H13INVIVO.0.PSGI.A.pfm
Threshold to P-value map	ZNF347.H13INVIVO.0.PSGI.A.thr
Motif in other formats
JASPAR format	ZNF347.H13INVIVO.0.PSGI.A_jaspar_format.txt
MEME format	ZNF347.H13INVIVO.0.PSGI.A_meme_format.meme
Transfac format	ZNF347.H13INVIVO.0.PSGI.A_transfac_format.txt
Homer format	ZNF347.H13INVIVO.0.PSGI.A_homer_format_0.001.txt ZNF347.H13INVIVO.0.PSGI.A_homer_format_0.0005.txt ZNF347.H13INVIVO.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	70.0	8.0	893.0	11.0
02	97.0	11.0	864.0	10.0
03	834.0	14.0	122.0	12.0
04	201.0	40.0	705.0	36.0
05	120.0	642.0	110.0	110.0
06	80.0	96.0	105.0	701.0
07	263.0	10.0	682.0	27.0
08	202.0	8.0	766.0	6.0
09	892.0	12.0	64.0	14.0
10	744.0	36.0	183.0	19.0
11	706.0	7.0	244.0	25.0
12	78.0	5.0	854.0	45.0
13	39.0	13.0	921.0	9.0
14	84.0	3.0	890.0	5.0
15	86.0	11.0	852.0	33.0
16	795.0	69.0	71.0	47.0
17	148.0	115.0	75.0	644.0
18	184.0	25.0	680.0	93.0
19	137.0	58.0	737.0	50.0
20	621.0	19.0	268.0	74.0
21	303.0	30.0	614.0	35.0
22	217.0	133.0	148.0	484.0
23	214.0	20.0	678.0	70.0
24	91.0	16.0	847.0	28.0
25	113.0	12.0	824.0	33.0

PFM

	A	C	G	T
01	0.071	0.008	0.909	0.011
02	0.099	0.011	0.88	0.01
03	0.849	0.014	0.124	0.012
04	0.205	0.041	0.718	0.037
05	0.122	0.654	0.112	0.112
06	0.081	0.098	0.107	0.714
07	0.268	0.01	0.695	0.027
08	0.206	0.008	0.78	0.006
09	0.908	0.012	0.065	0.014
10	0.758	0.037	0.186	0.019
11	0.719	0.007	0.248	0.025
12	0.079	0.005	0.87	0.046
13	0.04	0.013	0.938	0.009
14	0.086	0.003	0.906	0.005
15	0.088	0.011	0.868	0.034
16	0.81	0.07	0.072	0.048
17	0.151	0.117	0.076	0.656
18	0.187	0.025	0.692	0.095
19	0.14	0.059	0.751	0.051
20	0.632	0.019	0.273	0.075
21	0.309	0.031	0.625	0.036
22	0.221	0.135	0.151	0.493
23	0.218	0.02	0.69	0.071
24	0.093	0.016	0.863	0.029
25	0.115	0.012	0.839	0.034

PWM

	A	C	G	T
01	-1.237	-3.236	1.286	-2.967
02	-0.918	-2.967	1.253	-3.049
03	1.218	-2.755	-0.692	-2.891
04	-0.198	-1.779	1.05	-1.88
05	-0.709	0.957	-0.794	-0.794
06	-1.107	-0.928	-0.84	1.045
07	0.068	-3.049	1.017	-2.153
08	-0.194	-3.236	1.133	-3.466
09	1.285	-2.891	-1.325	-2.755
10	1.104	-1.88	-0.291	-2.479
11	1.052	-3.344	-0.006	-2.225
12	-1.132	-3.605	1.242	-1.666
13	-1.804	-2.821	1.317	-3.138
14	-1.059	-3.958	1.283	-3.605
15	-1.036	-2.967	1.239	-1.963
16	1.17	-1.252	-1.224	-1.624
17	-0.502	-0.75	-1.17	0.96
18	-0.286	-2.225	1.014	-0.959
19	-0.578	-1.421	1.095	-1.564
20	0.924	-2.479	0.087	-1.183
21	0.209	-2.053	0.913	-1.907
22	-0.122	-0.607	-0.502	0.675
23	-0.136	-2.432	1.011	-1.237
24	-0.981	-2.635	1.233	-2.118
25	-0.768	-2.891	1.206	-1.963

Standard thresholds

P-value	Threshold
0.001	-1.28174
0.0005	0.17316
0.0001	3.28156