ZNF367.H13RSNP.0.PSGI.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF367.H13RSNP.0.PSGI.D
Gene (human)	ZNF367 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf367
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	12
Consensus	dKTTAAAKRbMh
GC content	33.78%
Information content (bits; total / per base)	13.226 / 1.102
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.954	0.955	0.896	0.901	0.857	0.869	324.527	352.229

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 2 experiments	median	0.999	0.999	0.999	0.998	0.998	0.997
overall, 2 experiments	best	0.999	0.999	0.999	0.998	0.998	0.998
Lysate, 1 experiments	median	0.999	0.998	0.999	0.998	0.998	0.996
Lysate, 1 experiments	best	0.999	0.998	0.999	0.998	0.998	0.996
GFPIVT, 1 experiments	median	0.999	0.999	0.999	0.998	0.998	0.998
GFPIVT, 1 experiments	best	0.999	0.999	0.999	0.998	0.998	0.998

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 2 experiments	median	644.62	0.927	0.974	0.941
overall, 2 experiments	best	681.481	0.953	0.979	0.955
Lysate, 1 experiments	median	575.854	0.895	0.972	0.932
Lysate, 1 experiments	best	575.854	0.895	0.972	0.932
GFPIVT, 1 experiments	median	678.137	0.946	0.976	0.949
GFPIVT, 1 experiments	best	681.481	0.953	0.979	0.955

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.989	0.98	0.981	0.969	0.971	0.954
Overall, 1 experiments	best	0.989	0.98	0.981	0.969	0.971	0.954

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	Other {2.3.2.4} (TFClass)
TFClass ID	TFClass: 2.3.2.4.256
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZN367_HUMAN
UniProt ID (mouse)	ZN367_MOUSE
UniProt AC (human)	Q7RTV3 (TFClass)
UniProt AC (mouse)	Q0VDT2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	ZNF367.H13RSNP.0.PSGI.D.pcm
PWM	ZNF367.H13RSNP.0.PSGI.D.pwm
PFM	ZNF367.H13RSNP.0.PSGI.D.pfm
Threshold to P-value map	ZNF367.H13RSNP.0.PSGI.D.thr
Motif in other formats
JASPAR format	ZNF367.H13RSNP.0.PSGI.D_jaspar_format.txt
MEME format	ZNF367.H13RSNP.0.PSGI.D_meme_format.meme
Transfac format	ZNF367.H13RSNP.0.PSGI.D_transfac_format.txt
Homer format	ZNF367.H13RSNP.0.PSGI.D_homer_format_0.001.txt ZNF367.H13RSNP.0.PSGI.D_homer_format_0.0005.txt ZNF367.H13RSNP.0.PSGI.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	188.0	59.0	132.0	121.0
02	31.0	37.0	51.0	381.0
03	0.0	0.0	1.0	499.0
04	2.0	0.0	2.0	496.0
05	500.0	0.0	0.0	0.0
06	500.0	0.0	0.0	0.0
07	499.0	1.0	0.0	0.0
08	39.0	0.0	309.0	152.0
09	81.0	70.0	333.0	16.0
10	41.0	157.0	202.0	100.0
11	73.0	341.0	63.0	23.0
12	118.0	223.0	46.0	113.0

PFM

	A	C	G	T
01	0.376	0.118	0.264	0.242
02	0.062	0.074	0.102	0.762
03	0.0	0.0	0.002	0.998
04	0.004	0.0	0.004	0.992
05	1.0	0.0	0.0	0.0
06	1.0	0.0	0.0	0.0
07	0.998	0.002	0.0	0.0
08	0.078	0.0	0.618	0.304
09	0.162	0.14	0.666	0.032
10	0.082	0.314	0.404	0.2
11	0.146	0.682	0.126	0.046
12	0.236	0.446	0.092	0.226

PWM

	A	C	G	T
01	0.404	-0.737	0.054	-0.032
02	-1.358	-1.189	-0.879	1.106
03	-4.4	-4.4	-3.903	1.375
04	-3.573	-4.4	-3.573	1.369
05	1.377	-4.4	-4.4	-4.4
06	1.377	-4.4	-4.4	-4.4
07	1.375	-3.903	-4.4	-4.4
08	-1.138	-4.4	0.898	0.193
09	-0.427	-0.57	0.972	-1.975
10	-1.09	0.225	0.475	-0.22
11	-0.529	0.996	-0.673	-1.64
12	-0.057	0.573	-0.979	-0.1

Standard thresholds

P-value	Threshold
0.001	3.26145
0.0005	4.575575
0.0001	7.331315