| Motif | ZNF395.H13INVITRO.0.PSGI.A |
| Gene (human) | ZNF395 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ZNF395.H13INVITRO.0.PSGI.A |
| Gene (human) | ZNF395 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 15 |
| Consensus | vCCGGCCGGCWdnnn |
| GC content | 69.77% |
| Information content (bits; total / per base) | 15.517 / 1.034 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 250 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 1 (2) | 0.829 | 0.836 | 0.693 | 0.697 | 0.576 | 0.59 | 12.607 | 21.77 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 5 experiments | median | 1.0 | 1.0 | 0.999 | 0.999 | 0.949 | 0.958 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.998 | |
| Lysate, 2 experiments | median | 1.0 | 1.0 | 0.999 | 0.999 | 0.825 | 0.863 |
| best | 1.0 | 1.0 | 0.999 | 0.999 | 0.826 | 0.864 | |
| IVT, 1 experiments | median | 0.999 | 0.999 | 0.998 | 0.997 | 0.987 | 0.985 |
| best | 0.999 | 0.999 | 0.998 | 0.997 | 0.987 | 0.985 | |
| GFPIVT, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.974 | 0.978 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.999 | 0.998 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 5 experiments | median | 300.745 | 0.815 | 0.923 | 0.877 |
| best | 528.658 | 0.896 | 0.967 | 0.937 | |
| Lysate, 2 experiments | median | 414.702 | 0.821 | 0.945 | 0.892 |
| best | 528.658 | 0.847 | 0.967 | 0.937 | |
| IVT, 1 experiments | median | 159.357 | 0.634 | 0.894 | 0.793 |
| best | 159.357 | 0.634 | 0.894 | 0.793 | |
| GFPIVT, 2 experiments | median | 241.857 | 0.817 | 0.926 | 0.892 |
| best | 504.509 | 0.896 | 0.952 | 0.936 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.775 | 0.735 | 0.677 | 0.657 | 0.591 | 0.597 |
| best | 0.849 | 0.805 | 0.737 | 0.712 | 0.622 | 0.631 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Other with up to three adjacent zinc fingers {2.3.2} (TFClass) |
| TF subfamily | CR1-CR2 {2.3.2.255} (TFClass) |
| TFClass ID | TFClass: 2.3.2.255.2 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZN395_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q9H8N7 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| SMiLE-Seq | 2 |
| PBM | 0 |
| PCM | ZNF395.H13INVITRO.0.PSGI.A.pcm |
| PWM | ZNF395.H13INVITRO.0.PSGI.A.pwm |
| PFM | ZNF395.H13INVITRO.0.PSGI.A.pfm |
| Threshold to P-value map | ZNF395.H13INVITRO.0.PSGI.A.thr |
| Motif in other formats | |
| JASPAR format | ZNF395.H13INVITRO.0.PSGI.A_jaspar_format.txt |
| MEME format | ZNF395.H13INVITRO.0.PSGI.A_meme_format.meme |
| Transfac format | ZNF395.H13INVITRO.0.PSGI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 80.25 | 41.25 | 101.25 | 27.25 |
| 02 | 4.0 | 227.0 | 12.0 | 7.0 |
| 03 | 8.0 | 219.0 | 14.0 | 9.0 |
| 04 | 9.0 | 5.0 | 211.0 | 25.0 |
| 05 | 16.0 | 2.0 | 232.0 | 0.0 |
| 06 | 0.0 | 250.0 | 0.0 | 0.0 |
| 07 | 0.0 | 250.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 250.0 | 0.0 |
| 09 | 0.0 | 0.0 | 250.0 | 0.0 |
| 10 | 0.0 | 127.0 | 0.0 | 123.0 |
| 11 | 154.0 | 11.0 | 25.0 | 60.0 |
| 12 | 62.0 | 25.0 | 38.0 | 125.0 |
| 13 | 72.0 | 62.0 | 38.0 | 78.0 |
| 14 | 61.25 | 50.25 | 50.25 | 88.25 |
| 15 | 58.75 | 62.75 | 62.75 | 65.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.321 | 0.165 | 0.405 | 0.109 |
| 02 | 0.016 | 0.908 | 0.048 | 0.028 |
| 03 | 0.032 | 0.876 | 0.056 | 0.036 |
| 04 | 0.036 | 0.02 | 0.844 | 0.1 |
| 05 | 0.064 | 0.008 | 0.928 | 0.0 |
| 06 | 0.0 | 1.0 | 0.0 | 0.0 |
| 07 | 0.0 | 1.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 1.0 | 0.0 |
| 09 | 0.0 | 0.0 | 1.0 | 0.0 |
| 10 | 0.0 | 0.508 | 0.0 | 0.492 |
| 11 | 0.616 | 0.044 | 0.1 | 0.24 |
| 12 | 0.248 | 0.1 | 0.152 | 0.5 |
| 13 | 0.288 | 0.248 | 0.152 | 0.312 |
| 14 | 0.245 | 0.201 | 0.201 | 0.353 |
| 15 | 0.235 | 0.251 | 0.251 | 0.263 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.245 | -0.404 | 0.474 | -0.803 |
| 02 | -2.474 | 1.274 | -1.563 | -2.031 |
| 03 | -1.918 | 1.238 | -1.424 | -1.817 |
| 04 | -1.817 | -2.304 | 1.201 | -0.884 |
| 05 | -1.302 | -2.939 | 1.296 | -3.835 |
| 06 | -3.835 | 1.37 | -3.835 | -3.835 |
| 07 | -3.835 | 1.37 | -3.835 | -3.835 |
| 08 | -3.835 | -3.835 | 1.37 | -3.835 |
| 09 | -3.835 | -3.835 | 1.37 | -3.835 |
| 10 | -3.835 | 0.698 | -3.835 | 0.666 |
| 11 | 0.889 | -1.641 | -0.884 | -0.04 |
| 12 | -0.008 | -0.884 | -0.484 | 0.682 |
| 13 | 0.139 | -0.008 | -0.484 | 0.217 |
| 14 | -0.02 | -0.213 | -0.213 | 0.339 |
| 15 | -0.06 | 0.004 | 0.004 | 0.05 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.74211 |
| 0.0005 | 3.98371 |
| 0.0001 | 6.59671 |