MotifZNF407.H13CORE.0.PSGI.A
Gene (human)ZNF407
(GeneCards)
Gene synonyms (human)KIAA1703
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length22
ConsensusbTACGGdRRCYbdbvdGKvhMR
GC content61.93%
Information content (bits; total / per base)16.176 / 0.735
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words9674
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 1 (1) 0.863 0.863 0.817 0.817 0.822 0.822 186.456 186.456

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 3 experiments median 0.999 0.999 0.994 0.993 0.868 0.884
best 0.999 0.999 0.997 0.996 0.99 0.986
Lysate, 1 experiments median 0.999 0.999 0.994 0.993 0.868 0.884
best 0.999 0.999 0.994 0.993 0.868 0.884
IVT, 1 experiments median 0.766 0.777 0.619 0.645 0.555 0.582
best 0.766 0.777 0.619 0.645 0.555 0.582
GFPIVT, 1 experiments median 0.999 0.999 0.997 0.996 0.99 0.986
best 0.999 0.999 0.997 0.996 0.99 0.986

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 2 experiments median 309.959 0.916 0.928 0.918
best 387.222 0.958 0.965 0.949
Lysate, 1 experiments median 309.959 0.916 0.928 0.918
best 387.222 0.958 0.965 0.949
GFPIVT, 1 experiments median 280.974 0.878 0.896 0.836
best 356.027 0.935 0.936 0.921

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.809 0.77 0.684 0.671 0.602 0.607
best 0.809 0.77 0.684 0.671 0.602 0.607
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.73
HGNCHGNC:19904
MGI
EntrezGene (human)GeneID:55628
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN407_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q9C0G0
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
no
ChIP-Seq 1 human, 0 mouse
HT-SELEX 3 overall: 1 Lysate, 1 IVT, 1 GFPIVT
Genomic HT-SELEX 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 1
PBM 0
PCM
ACGT
011043.754614.752400.751614.75
02211.550.5961.58450.5
039503.055.051.065.0
04128.08930.059.0557.0
0570.031.09536.037.0
0617.011.09615.031.0
074343.01297.01318.02716.0
083529.041.05155.0949.0
091369.0693.06584.01028.0
10210.07271.02138.055.0
11576.06312.0383.02403.0
12661.02980.04779.01254.0
134053.01282.02850.01489.0
141425.02701.04058.01490.0
154180.01670.02748.01076.0
164014.01017.02899.01744.0
171004.0423.07945.0302.0
18989.0761.06803.01121.0
191515.01685.05177.01297.0
202575.03852.0730.02517.0
211726.56339.51068.5539.5
226510.5950.51570.5642.5
PFM
ACGT
010.1080.4770.2480.167
020.0220.0050.0990.874
030.9820.0060.0050.007
040.0130.9230.0060.058
050.0070.0030.9860.004
060.0020.0010.9940.003
070.4490.1340.1360.281
080.3650.0040.5330.098
090.1420.0720.6810.106
100.0220.7520.2210.006
110.060.6520.040.248
120.0680.3080.4940.13
130.4190.1330.2950.154
140.1470.2790.4190.154
150.4320.1730.2840.111
160.4150.1050.30.18
170.1040.0440.8210.031
180.1020.0790.7030.116
190.1570.1740.5350.134
200.2660.3980.0750.26
210.1780.6550.110.056
220.6730.0980.1620.066
PWM
ACGT
01-0.8390.646-0.007-0.403
02-2.427-3.825-0.9211.25
031.368-3.744-3.816-3.583
04-2.9221.306-3.676-1.465
05-3.511-4.2861.371-4.121
06-4.832-5.2051.379-4.286
070.585-0.622-0.6060.116
080.378-4.0240.756-0.934
09-0.568-1.2481.001-0.854
10-2.4341.1-0.123-3.744
11-1.4320.959-1.838-0.006
12-1.2950.2090.681-0.656
130.516-0.6340.164-0.484
14-0.5280.110.517-0.484
150.547-0.370.128-0.809
160.506-0.8650.181-0.327
17-0.878-1.7391.189-2.074
18-0.893-1.1541.034-0.768
19-0.467-0.3610.761-0.622
200.0630.465-1.1960.04
21-0.3370.963-0.816-1.497
220.99-0.932-0.431-1.323
Standard thresholds
P-value Threshold
0.001 2.36111
0.0005 3.61896
0.0001 6.22986