| Motif | ZNF43.H13INVIVO.0.PSGI.A |
| Gene (human) | ZNF43 (GeneCards) |
| Gene synonyms (human) | KOX27, ZNF39, ZNF39L1 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | ZNF43.H13INVIVO.0.PSGI.A |
| Gene (human) | ZNF43 (GeneCards) |
| Gene synonyms (human) | KOX27, ZNF39, ZNF39L1 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 21 |
| Consensus | YdSYWdvTTKCTYYhnhhYYY |
| GC content | 38.28% |
| Information content (bits; total / per base) | 13.653 / 0.65 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 1000 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 1 (1) | 0.836 | 0.836 | 0.786 | 0.786 | 0.7 | 0.7 | 47.377 | 47.377 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| GFPIVT, 3 experiments | median | 0.936 | 0.908 | 0.881 | 0.842 | 0.795 | 0.766 |
| best | 0.948 | 0.922 | 0.897 | 0.864 | 0.815 | 0.787 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| GFPIVT, 3 experiments | median | 89.102 | 0.696 | 0.628 | 0.463 |
| best | 285.377 | 0.865 | 0.895 | 0.883 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.568 | 0.542 | 0.521 | 0.521 | 0.501 | 0.509 |
| best | 0.575 | 0.544 | 0.542 | 0.53 | 0.515 | 0.517 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.230 |
| HGNC | HGNC:13109 |
| MGI | |
| EntrezGene (human) | GeneID:7594 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZNF43_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | P17038 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 3 overall: 0 Lysate, 0 IVT, 3 GFPIVT |
| Genomic HT-SELEX | 3 overall: 0 Lysate, 0 IVT, 3 GFPIVT |
| SMiLE-Seq | 2 |
| PBM | 0 |
| PCM | ZNF43.H13INVIVO.0.PSGI.A.pcm |
| PWM | ZNF43.H13INVIVO.0.PSGI.A.pwm |
| PFM | ZNF43.H13INVIVO.0.PSGI.A.pfm |
| Threshold to P-value map | ZNF43.H13INVIVO.0.PSGI.A.thr |
| Motif in other formats | |
| JASPAR format | ZNF43.H13INVIVO.0.PSGI.A_jaspar_format.txt |
| MEME format | ZNF43.H13INVIVO.0.PSGI.A_meme_format.meme |
| Transfac format | ZNF43.H13INVIVO.0.PSGI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 77.0 | 164.0 | 44.0 | 715.0 |
| 02 | 401.0 | 78.0 | 215.0 | 306.0 |
| 03 | 26.0 | 751.0 | 119.0 | 104.0 |
| 04 | 24.0 | 552.0 | 13.0 | 411.0 |
| 05 | 238.0 | 52.0 | 126.0 | 584.0 |
| 06 | 201.0 | 44.0 | 533.0 | 222.0 |
| 07 | 523.0 | 126.0 | 273.0 | 78.0 |
| 08 | 15.0 | 36.0 | 10.0 | 939.0 |
| 09 | 2.0 | 8.0 | 15.0 | 975.0 |
| 10 | 27.0 | 54.0 | 397.0 | 522.0 |
| 11 | 52.0 | 819.0 | 64.0 | 65.0 |
| 12 | 37.0 | 136.0 | 9.0 | 818.0 |
| 13 | 108.0 | 576.0 | 61.0 | 255.0 |
| 14 | 85.0 | 667.0 | 33.0 | 215.0 |
| 15 | 518.0 | 141.0 | 61.0 | 280.0 |
| 16 | 250.0 | 127.0 | 373.0 | 250.0 |
| 17 | 509.0 | 170.0 | 123.0 | 198.0 |
| 18 | 475.0 | 138.0 | 94.0 | 293.0 |
| 19 | 56.0 | 150.0 | 96.0 | 698.0 |
| 20 | 56.0 | 188.0 | 114.0 | 642.0 |
| 21 | 78.0 | 177.0 | 112.0 | 633.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.077 | 0.164 | 0.044 | 0.715 |
| 02 | 0.401 | 0.078 | 0.215 | 0.306 |
| 03 | 0.026 | 0.751 | 0.119 | 0.104 |
| 04 | 0.024 | 0.552 | 0.013 | 0.411 |
| 05 | 0.238 | 0.052 | 0.126 | 0.584 |
| 06 | 0.201 | 0.044 | 0.533 | 0.222 |
| 07 | 0.523 | 0.126 | 0.273 | 0.078 |
| 08 | 0.015 | 0.036 | 0.01 | 0.939 |
| 09 | 0.002 | 0.008 | 0.015 | 0.975 |
| 10 | 0.027 | 0.054 | 0.397 | 0.522 |
| 11 | 0.052 | 0.819 | 0.064 | 0.065 |
| 12 | 0.037 | 0.136 | 0.009 | 0.818 |
| 13 | 0.108 | 0.576 | 0.061 | 0.255 |
| 14 | 0.085 | 0.667 | 0.033 | 0.215 |
| 15 | 0.518 | 0.141 | 0.061 | 0.28 |
| 16 | 0.25 | 0.127 | 0.373 | 0.25 |
| 17 | 0.509 | 0.17 | 0.123 | 0.198 |
| 18 | 0.475 | 0.138 | 0.094 | 0.293 |
| 19 | 0.056 | 0.15 | 0.096 | 0.698 |
| 20 | 0.056 | 0.188 | 0.114 | 0.642 |
| 21 | 0.078 | 0.177 | 0.112 | 0.633 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.162 | -0.418 | -1.706 | 1.046 |
| 02 | 0.47 | -1.15 | -0.15 | 0.201 |
| 03 | -2.206 | 1.095 | -0.735 | -0.867 |
| 04 | -2.281 | 0.788 | -2.839 | 0.494 |
| 05 | -0.049 | -1.544 | -0.678 | 0.845 |
| 06 | -0.216 | -1.706 | 0.753 | -0.118 |
| 07 | 0.735 | -0.678 | 0.087 | -1.15 |
| 08 | -2.711 | -1.898 | -3.066 | 1.318 |
| 09 | -4.213 | -3.253 | -2.711 | 1.356 |
| 10 | -2.171 | -1.508 | 0.46 | 0.733 |
| 11 | -1.544 | 1.182 | -1.343 | -1.328 |
| 12 | -1.872 | -0.603 | -3.156 | 1.181 |
| 13 | -0.83 | 0.831 | -1.39 | 0.02 |
| 14 | -1.066 | 0.977 | -1.981 | -0.15 |
| 15 | 0.725 | -0.567 | -1.39 | 0.113 |
| 16 | 0.0 | -0.671 | 0.398 | 0.0 |
| 17 | 0.707 | -0.382 | -0.702 | -0.231 |
| 18 | 0.639 | -0.589 | -0.967 | 0.158 |
| 19 | -1.473 | -0.506 | -0.946 | 1.022 |
| 20 | -1.473 | -0.283 | -0.777 | 0.939 |
| 21 | -1.15 | -0.342 | -0.795 | 0.925 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.80471 |
| 0.0005 | 4.79021 |
| 0.0001 | 6.85776 |