ZNF43.H13RSNP.0.PSGI.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF43.H13RSNP.0.PSGI.D
Gene (human)	ZNF43 (GeneCards)
Gene synonyms (human)	KOX27, ZNF39, ZNF39L1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	12
Consensus	SYRRATTGCThS
GC content	50.33%
Information content (bits; total / per base)	13.092 / 1.091
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	6429
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.822	0.822	0.704	0.704	0.64	0.64	61.553	61.553

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 3 experiments	median	0.989	0.983	0.966	0.954	0.912	0.894
GFPIVT, 3 experiments	best	0.995	0.993	0.977	0.97	0.917	0.905

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 3 experiments	median	196.066	0.685	0.789	0.667
GFPIVT, 3 experiments	best	285.721	0.774	0.847	0.741

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.543	0.552	0.536	0.532	0.513	0.518
Overall, 2 experiments	best	0.566	0.57	0.538	0.537	0.519	0.522

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.230
HGNC	HGNC:13109
MGI
EntrezGene (human)	GeneID:7594 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF43_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17038 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
Genomic HT-SELEX	3 overall: 0 Lysate, 0 IVT, 3 GFPIVT
SMiLE-Seq	2
PBM	0

PCM	ZNF43.H13RSNP.0.PSGI.D.pcm
PWM	ZNF43.H13RSNP.0.PSGI.D.pwm
PFM	ZNF43.H13RSNP.0.PSGI.D.pfm
Threshold to P-value map	ZNF43.H13RSNP.0.PSGI.D.thr
Motif in other formats
JASPAR format	ZNF43.H13RSNP.0.PSGI.D_jaspar_format.txt
MEME format	ZNF43.H13RSNP.0.PSGI.D_meme_format.meme
Transfac format	ZNF43.H13RSNP.0.PSGI.D_transfac_format.txt
Homer format	ZNF43.H13RSNP.0.PSGI.D_homer_format_0.001.txt ZNF43.H13RSNP.0.PSGI.D_homer_format_0.0005.txt ZNF43.H13RSNP.0.PSGI.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	472.0	3980.0	1705.0	272.0
02	28.75	3030.75	13.75	3355.75
03	4539.0	560.0	884.0	446.0
04	1351.0	20.0	4700.0	358.0
05	4165.0	13.0	2251.0	0.0
06	0.0	2.0	4.0	6423.0
07	24.0	0.0	1.0	6404.0
08	93.0	11.0	5912.0	413.0
09	168.0	5881.0	327.0	53.0
10	453.0	352.0	253.0	5371.0
11	1779.0	3437.0	525.0	688.0
12	759.25	4077.25	886.25	706.25

PFM

	A	C	G	T
01	0.073	0.619	0.265	0.042
02	0.004	0.471	0.002	0.522
03	0.706	0.087	0.138	0.069
04	0.21	0.003	0.731	0.056
05	0.648	0.002	0.35	0.0
06	0.0	0.0	0.001	0.999
07	0.004	0.0	0.0	0.996
08	0.014	0.002	0.92	0.064
09	0.026	0.915	0.051	0.008
10	0.07	0.055	0.039	0.835
11	0.277	0.535	0.082	0.107
12	0.118	0.634	0.138	0.11

PWM

	A	C	G	T
01	-1.222	0.906	0.059	-1.77
02	-3.952	0.634	-4.615	0.735
03	1.037	-1.052	-0.597	-1.278
04	-0.173	-4.284	1.072	-1.497
05	0.951	-4.663	0.336	-6.599
06	-6.599	-5.95	-5.56	1.384
07	-4.118	-6.599	-6.223	1.381
08	-2.828	-4.804	1.301	-1.355
09	-2.247	1.296	-1.587	-3.373
10	-1.263	-1.514	-1.842	1.206
11	0.101	0.759	-1.116	-0.847
12	-0.748	0.93	-0.594	-0.821

Standard thresholds

P-value	Threshold
0.001	3.50492
0.0005	4.732635
0.0001	7.11379