ZNF470.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF470.H13INVITRO.0.PSG.A
Gene (human)	ZNF470 (GeneCards)
Gene synonyms (human)	CZF1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	22
Consensus	nRbnhTCTTCTTCTGKTWvYWn
GC content	43.08%
Information content (bits; total / per base)	23.559 / 1.071
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	2399
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (4)	0.862	0.916	0.842	0.898	0.883	0.951	86.802	192.824

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.874	0.882	0.801	0.816	0.725	0.745
GFPIVT, 2 experiments	best	1.0	0.999	0.998	0.997	0.904	0.916

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	68.459	0.674	0.608	0.587
GFPIVT, 2 experiments	best	499.0	0.876	0.857	0.825

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.208
HGNC	HGNC:22220
MGI
EntrezGene (human)	GeneID:388566 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN470_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ECI4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF470.H13INVITRO.0.PSG.A.pcm
PWM	ZNF470.H13INVITRO.0.PSG.A.pwm
PFM	ZNF470.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF470.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF470.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF470.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF470.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF470.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF470.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF470.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	452.5	532.5	871.5	542.5
02	327.5	202.5	1545.5	323.5
03	360.0	900.0	379.0	760.0
04	801.0	690.0	437.0	471.0
05	559.0	894.0	200.0	746.0
06	15.0	14.0	14.0	2356.0
07	2.0	2288.0	2.0	107.0
08	129.0	75.0	138.0	2057.0
09	4.0	0.0	0.0	2395.0
10	0.0	2387.0	0.0	12.0
11	19.0	2.0	60.0	2318.0
12	3.0	0.0	0.0	2396.0
13	1.0	2373.0	0.0	25.0
14	28.0	6.0	58.0	2307.0
15	0.0	2.0	2390.0	7.0
16	100.0	8.0	1131.0	1160.0
17	14.0	131.0	51.0	2203.0
18	784.0	310.0	77.0	1228.0
19	1029.0	498.0	566.0	306.0
20	80.0	1868.0	96.0	355.0
21	187.25	180.25	177.25	1854.25
22	540.75	544.75	639.75	673.75

PFM

	A	C	G	T
01	0.189	0.222	0.363	0.226
02	0.137	0.084	0.644	0.135
03	0.15	0.375	0.158	0.317
04	0.334	0.288	0.182	0.196
05	0.233	0.373	0.083	0.311
06	0.006	0.006	0.006	0.982
07	0.001	0.954	0.001	0.045
08	0.054	0.031	0.058	0.857
09	0.002	0.0	0.0	0.998
10	0.0	0.995	0.0	0.005
11	0.008	0.001	0.025	0.966
12	0.001	0.0	0.0	0.999
13	0.0	0.989	0.0	0.01
14	0.012	0.003	0.024	0.962
15	0.0	0.001	0.996	0.003
16	0.042	0.003	0.471	0.484
17	0.006	0.055	0.021	0.918
18	0.327	0.129	0.032	0.512
19	0.429	0.208	0.236	0.128
20	0.033	0.779	0.04	0.148
21	0.078	0.075	0.074	0.773
22	0.225	0.227	0.267	0.281

PWM

	A	C	G	T
01	-0.281	-0.119	0.373	-0.1
02	-0.602	-1.079	0.945	-0.615
03	-0.508	0.405	-0.457	0.236
04	0.289	0.14	-0.315	-0.241
05	-0.07	0.398	-1.092	0.218
06	-3.57	-3.631	-3.631	1.366
07	-5.027	1.337	-5.027	-1.709
08	-1.525	-2.057	-1.458	1.23
09	-4.617	-5.734	-5.734	1.382
10	-5.734	1.379	-5.734	-3.765
11	-3.358	-5.027	-2.273	1.35
12	-4.801	-5.734	-5.734	1.383
13	-5.319	1.373	-5.734	-3.106
14	-3.0	-4.327	-2.306	1.345
15	-5.734	-5.027	1.38	-4.209
16	-1.775	-4.103	0.633	0.658
17	-3.631	-1.51	-2.43	1.299
18	0.267	-0.657	-2.031	0.715
19	0.538	-0.185	-0.058	-0.67
20	-1.994	1.134	-1.815	-0.522
21	-1.157	-1.195	-1.211	1.127
22	-0.103	-0.096	0.064	0.116

Standard thresholds

P-value	Threshold
0.001	-4.07264
0.0005	-2.21454
0.0001	1.72141