ZNF471.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF471.H13INVITRO.0.PSG.A
Gene (human)	ZNF471 (GeneCards)
Gene synonyms (human)	ERP1, KIAA1396
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	17
Consensus	bMnbTCnWTbTCdKWbv
GC content	44.67%
Information content (bits; total / per base)	11.404 / 0.671
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	9196
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (5)	0.903	0.908	0.817	0.828	0.88	0.894	232.854	274.292

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.886	0.882	0.803	0.803	0.71	0.719
GFPIVT, 2 experiments	best	0.989	0.983	0.962	0.95	0.849	0.847

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	693.28	0.933	0.919	0.854
GFPIVT, 2 experiments	best	812.959	0.954	0.94	0.874

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.191
HGNC	HGNC:23226
MGI
EntrezGene (human)	GeneID:57573 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN471_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9BX82 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF471.H13INVITRO.0.PSG.A.pcm
PWM	ZNF471.H13INVITRO.0.PSG.A.pwm
PFM	ZNF471.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF471.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF471.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF471.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF471.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF471.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF471.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF471.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	797.5	1725.5	4708.5	1964.5
02	5710.75	1543.75	847.75	1093.75
03	2505.0	1417.0	2257.0	3017.0
04	403.0	4162.0	2708.0	1923.0
05	103.0	71.0	71.0	8951.0
06	20.0	8099.0	28.0	1049.0
07	2073.0	3502.0	1595.0	2026.0
08	4462.0	440.0	84.0	4210.0
09	76.0	1931.0	62.0	7127.0
10	812.0	3833.0	3239.0	1312.0
11	64.0	82.0	33.0	9017.0
12	36.0	8648.0	26.0	486.0
13	2835.0	417.0	3098.0	2846.0
14	685.0	289.0	2892.0	5330.0
15	2565.0	474.0	983.0	5174.0
16	940.0	3113.0	2462.0	2681.0
17	2943.25	1399.25	3591.25	1262.25

PFM

	A	C	G	T
01	0.087	0.188	0.512	0.214
02	0.621	0.168	0.092	0.119
03	0.272	0.154	0.245	0.328
04	0.044	0.453	0.294	0.209
05	0.011	0.008	0.008	0.973
06	0.002	0.881	0.003	0.114
07	0.225	0.381	0.173	0.22
08	0.485	0.048	0.009	0.458
09	0.008	0.21	0.007	0.775
10	0.088	0.417	0.352	0.143
11	0.007	0.009	0.004	0.981
12	0.004	0.94	0.003	0.053
13	0.308	0.045	0.337	0.309
14	0.074	0.031	0.314	0.58
15	0.279	0.052	0.107	0.563
16	0.102	0.339	0.268	0.292
17	0.32	0.152	0.391	0.137

PWM

	A	C	G	T
01	-1.057	-0.287	0.716	-0.157
02	0.909	-0.398	-0.996	-0.742
03	0.086	-0.483	-0.018	0.272
04	-1.737	0.593	0.164	-0.178
05	-3.085	-3.447	-3.447	1.359
06	-4.637	1.259	-4.331	-0.783
07	-0.103	0.421	-0.365	-0.126
08	0.663	-1.649	-3.284	0.605
09	-3.381	-0.174	-3.578	1.131
10	-1.039	0.511	0.343	-0.56
11	-3.547	-3.307	-4.178	1.366
12	-4.096	1.324	-4.399	-1.55
13	0.209	-1.703	0.298	0.213
14	-1.208	-2.067	0.229	0.84
15	0.109	-1.575	-0.848	0.811
16	-0.893	0.303	0.068	0.154
17	0.247	-0.496	0.446	-0.599

Standard thresholds

P-value	Threshold
0.001	4.27276
0.0005	5.31141
0.0001	7.35826