ZNF471.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF471.H13INVIVO.0.PSG.A
Gene (human)	ZNF471 (GeneCards)
Gene synonyms (human)	ERP1, KIAA1396
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	25
Consensus	WTYTGAAKTCYYTKTCWGRhWddYY
GC content	34.11%
Information content (bits; total / per base)	23.567 / 0.943
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	930
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (5)	0.924	0.928	0.909	0.912	0.83	0.885	308.081	442.31

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.698	0.69	0.626	0.624	0.565	0.576
GFPIVT, 2 experiments	best	0.902	0.885	0.756	0.751	0.635	0.654

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	71.138	0.574	0.445	0.395
GFPIVT, 2 experiments	best	244.921	0.683	0.635	0.603

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.191
HGNC	HGNC:23226
MGI
EntrezGene (human)	GeneID:57573 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN471_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9BX82 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF471.H13INVIVO.0.PSG.A.pcm
PWM	ZNF471.H13INVIVO.0.PSG.A.pwm
PFM	ZNF471.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF471.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF471.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF471.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF471.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF471.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF471.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF471.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	115.0	97.0	44.0	674.0
02	50.0	81.0	41.0	758.0
03	51.0	95.0	42.0	742.0
04	33.0	18.0	36.0	843.0
05	74.0	29.0	777.0	50.0
06	782.0	47.0	51.0	50.0
07	800.0	23.0	44.0	63.0
08	25.0	71.0	126.0	708.0
09	16.0	13.0	9.0	892.0
10	31.0	773.0	8.0	118.0
11	44.0	263.0	11.0	612.0
12	28.0	228.0	17.0	657.0
13	3.0	86.0	7.0	834.0
14	35.0	33.0	514.0	348.0
15	13.0	23.0	12.0	882.0
16	6.0	803.0	9.0	112.0
17	435.0	14.0	30.0	451.0
18	44.0	15.0	821.0	50.0
19	371.0	17.0	441.0	101.0
20	226.0	447.0	53.0	204.0
21	713.0	76.0	31.0	110.0
22	214.0	77.0	385.0	254.0
23	145.0	129.0	194.0	462.0
24	69.0	97.0	54.0	710.0
25	68.0	555.0	63.0	244.0

PFM

	A	C	G	T
01	0.124	0.104	0.047	0.725
02	0.054	0.087	0.044	0.815
03	0.055	0.102	0.045	0.798
04	0.035	0.019	0.039	0.906
05	0.08	0.031	0.835	0.054
06	0.841	0.051	0.055	0.054
07	0.86	0.025	0.047	0.068
08	0.027	0.076	0.135	0.761
09	0.017	0.014	0.01	0.959
10	0.033	0.831	0.009	0.127
11	0.047	0.283	0.012	0.658
12	0.03	0.245	0.018	0.706
13	0.003	0.092	0.008	0.897
14	0.038	0.035	0.553	0.374
15	0.014	0.025	0.013	0.948
16	0.006	0.863	0.01	0.12
17	0.468	0.015	0.032	0.485
18	0.047	0.016	0.883	0.054
19	0.399	0.018	0.474	0.109
20	0.243	0.481	0.057	0.219
21	0.767	0.082	0.033	0.118
22	0.23	0.083	0.414	0.273
23	0.156	0.139	0.209	0.497
24	0.074	0.104	0.058	0.763
25	0.073	0.597	0.068	0.262

PWM

	A	C	G	T
01	-0.697	-0.864	-1.634	1.06
02	-1.511	-1.041	-1.702	1.177
03	-1.491	-0.885	-1.679	1.155
04	-1.909	-2.475	-1.826	1.283
05	-1.129	-2.032	1.201	-1.511
06	1.208	-1.57	-1.491	-1.511
07	1.231	-2.249	-1.634	-1.286
08	-2.171	-1.17	-0.606	1.109
09	-2.582	-2.768	-3.085	1.339
10	-1.969	1.196	-3.183	-0.671
11	-1.634	0.122	-2.914	0.963
12	-2.065	-0.019	-2.527	1.034
13	-3.907	-0.982	-3.292	1.272
14	-1.853	-1.909	0.789	0.401
15	-2.768	-2.249	-2.838	1.328
16	-3.414	1.234	-3.085	-0.723
17	0.623	-2.702	-2.0	0.659
18	-1.634	-2.64	1.256	-1.511
19	0.465	-2.527	0.637	-0.824
20	-0.028	0.65	-1.454	-0.13
21	1.116	-1.103	-1.969	-0.74
22	-0.082	-1.09	0.501	0.088
23	-0.468	-0.583	-0.18	0.683
24	-1.198	-0.864	-1.436	1.111
25	-1.212	0.866	-1.286	0.048

Standard thresholds

P-value	Threshold
0.001	-0.25899
0.0005	1.10691
0.0001	4.03031