MotifZNF48.H13CORE.0.PSG.A
Gene (human)ZNF48
(GeneCards)
Gene synonyms (human)ZNF553
Gene (mouse)Znf48
Gene synonyms (mouse)Zfp48, Zfp553, Znf553
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length25
ConsensusdSRSRSRvvvvSRGMGvMRGRGRvv
GC content60.38%
Information content (bits; total / per base)15.488 / 0.62
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words499
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 2 (4) 0.697 0.71 0.521 0.526 0.718 0.779 0.491 1.194

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 3 experiments median 0.617 0.587 0.57 0.555 0.542 0.536
best 0.84 0.789 0.763 0.719 0.681 0.657
Lysate, 2 experiments median 0.597 0.572 0.562 0.547 0.537 0.531
best 0.617 0.587 0.57 0.555 0.542 0.536
GFPIVT, 1 experiments median 0.84 0.789 0.763 0.719 0.681 0.657
best 0.84 0.789 0.763 0.719 0.681 0.657

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 3 experiments median 157.328 0.97 0.929 0.826
best 348.481 0.985 0.943 0.861
Lysate, 2 experiments median 326.22 0.965 0.94 0.861
best 348.481 0.978 0.943 0.861
GFPIVT, 1 experiments median 155.041 0.97 0.893 0.766
best 157.328 0.985 0.929 0.826
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.48
HGNCHGNC:13114
MGIMGI:2384725
EntrezGene (human)GeneID:197407
(SSTAR profile)
EntrezGene (mouse)GeneID:233887
(SSTAR profile)
UniProt ID (human)ZNF48_HUMAN
UniProt ID (mouse)ZNF48_MOUSE
UniProt AC (human)Q96MX3
(TFClass)
UniProt AC (mouse)Q3US17
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 0
PBM 0
PCM
ACGT
01255.058.0125.061.0
0269.0125.0297.08.0
03314.073.094.018.0
0430.087.0360.022.0
05302.057.0124.016.0
0672.078.0326.023.0
07307.054.0129.09.0
0863.0195.0219.022.0
09243.088.0133.035.0
1061.0157.0237.044.0
11215.083.0171.030.0
1270.0174.0244.011.0
13292.020.0176.011.0
1438.037.0420.04.0
15357.095.023.024.0
1620.054.0413.012.0
17249.073.0151.026.0
1864.0391.033.011.0
19317.049.086.047.0
2032.039.0422.06.0
21328.075.082.014.0
2245.04.0440.010.0
23304.057.0120.018.0
2460.0208.0185.046.0
25270.047.0144.038.0
PFM
ACGT
010.5110.1160.2510.122
020.1380.2510.5950.016
030.6290.1460.1880.036
040.060.1740.7210.044
050.6050.1140.2480.032
060.1440.1560.6530.046
070.6150.1080.2590.018
080.1260.3910.4390.044
090.4870.1760.2670.07
100.1220.3150.4750.088
110.4310.1660.3430.06
120.140.3490.4890.022
130.5850.040.3530.022
140.0760.0740.8420.008
150.7150.190.0460.048
160.040.1080.8280.024
170.4990.1460.3030.052
180.1280.7840.0660.022
190.6350.0980.1720.094
200.0640.0780.8460.012
210.6570.150.1640.028
220.090.0080.8820.02
230.6090.1140.240.036
240.120.4170.3710.092
250.5410.0940.2890.076
PWM
ACGT
010.709-0.7520.002-0.703
02-0.5820.0020.86-2.582
030.916-0.527-0.279-1.866
04-1.387-0.3551.052-1.679
050.877-0.769-0.006-1.973
06-0.541-0.4620.953-1.638
070.893-0.8210.033-2.482
08-0.6710.4420.557-1.679
090.661-0.3440.063-1.24
10-0.7030.2270.636-1.02
110.539-0.4010.312-1.387
12-0.5680.3290.665-2.309
130.843-1.7680.341-2.309
14-1.161-1.1871.205-3.124
151.043-0.269-1.638-1.598
16-1.768-0.8211.189-2.232
170.685-0.5270.189-1.523
18-0.6561.134-1.296-2.309
190.925-0.916-0.366-0.956
20-1.326-1.1361.21-2.817
210.959-0.501-0.413-2.094
22-0.998-3.1241.252-2.392
230.883-0.769-0.038-1.866
24-0.7190.5060.39-0.977
250.765-0.9560.142-1.161
Standard thresholds
P-value Threshold
0.001 3.37476
0.0005 4.39366
0.0001 6.55706