MotifZNF48.H13INVIVO.0.PSG.A
Gene (human)ZNF48
(GeneCards)
Gene synonyms (human)ZNF553
Gene (mouse)Znf48
Gene synonyms (mouse)Zfp48, Zfp553, Znf553
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length25
ConsensusvSRGMRRvvGvRRvdSMSvSRSvvv
GC content63.56%
Information content (bits; total / per base)13.938 / 0.558
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words1000
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 2 (4) 0.706 0.721 0.519 0.533 0.748 0.809 0.594 1.131

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 3 experiments median 0.586 0.558 0.557 0.54 0.538 0.529
best 0.744 0.686 0.685 0.64 0.628 0.602
Lysate, 2 experiments median 0.571 0.547 0.549 0.534 0.533 0.525
best 0.586 0.558 0.557 0.54 0.538 0.529
GFPIVT, 1 experiments median 0.744 0.686 0.685 0.64 0.628 0.602
best 0.744 0.686 0.685 0.64 0.628 0.602

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 3 experiments median 122.481 0.973 0.924 0.803
best 279.432 0.986 0.939 0.846
Lysate, 2 experiments median 273.971 0.966 0.936 0.844
best 279.432 0.979 0.939 0.846
GFPIVT, 1 experiments median 104.509 0.973 0.882 0.716
best 122.481 0.986 0.924 0.803
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.48
HGNCHGNC:13114
MGIMGI:2384725
EntrezGene (human)GeneID:197407
(SSTAR profile)
EntrezGene (mouse)GeneID:233887
(SSTAR profile)
UniProt ID (human)ZNF48_HUMAN
UniProt ID (mouse)ZNF48_MOUSE
UniProt AC (human)Q96MX3
(TFClass)
UniProt AC (mouse)Q3US17
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 0
PBM 0
PCM
ACGT
01434.099.0401.066.0
02148.0367.0462.023.0
03602.028.0304.066.0
0470.060.0855.015.0
05727.0195.043.035.0
06147.0112.0715.026.0
07391.0105.0464.040.0
08142.0583.0199.076.0
09509.0141.0277.073.0
10115.054.0812.019.0
11492.0319.0161.028.0
12134.065.0768.033.0
13388.0109.0486.017.0
14159.0550.0225.066.0
15445.070.0382.0103.0
1667.0196.0724.013.0
17546.0308.0125.021.0
18129.0136.0687.048.0
19438.0104.0404.054.0
20146.0287.0541.026.0
21612.088.0261.039.0
22112.0195.0659.034.0
23466.0257.0211.066.0
24172.0213.0562.053.0
25429.0173.0349.049.0
PFM
ACGT
010.4340.0990.4010.066
020.1480.3670.4620.023
030.6020.0280.3040.066
040.070.060.8550.015
050.7270.1950.0430.035
060.1470.1120.7150.026
070.3910.1050.4640.04
080.1420.5830.1990.076
090.5090.1410.2770.073
100.1150.0540.8120.019
110.4920.3190.1610.028
120.1340.0650.7680.033
130.3880.1090.4860.017
140.1590.550.2250.066
150.4450.070.3820.103
160.0670.1960.7240.013
170.5460.3080.1250.021
180.1290.1360.6870.048
190.4380.1040.4040.054
200.1460.2870.5410.026
210.6120.0880.2610.039
220.1120.1950.6590.034
230.4660.2570.2110.066
240.1720.2130.5620.053
250.4290.1730.3490.049
PWM
ACGT
010.549-0.9160.47-1.313
02-0.520.3820.611-2.32
030.875-2.1360.194-1.313
04-1.255-1.4061.225-2.711
051.063-0.247-1.728-1.925
06-0.526-0.7951.046-2.206
070.445-0.8580.615-1.797
08-0.560.843-0.226-1.175
090.707-0.5670.102-1.215
10-0.769-1.5081.173-2.497
110.6740.242-0.436-2.136
12-0.618-1.3281.118-1.981
130.437-0.8210.661-2.598
14-0.4490.785-0.105-1.313
150.574-1.2550.422-0.877
16-1.298-0.2411.059-2.839
170.7770.207-0.686-2.405
18-0.655-0.6031.006-1.622
190.558-0.8670.477-1.508
20-0.5330.1370.768-2.206
210.891-1.0320.043-1.821
22-0.795-0.2470.965-1.952
230.620.027-0.168-1.313
24-0.371-0.1590.806-1.526
250.537-0.3650.332-1.602
Standard thresholds
P-value Threshold
0.001 3.78591
0.0005 4.74796
0.0001 6.78576