ZNF497.H13INVITRO.0.SG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF497.H13INVITRO.0.SG.A
Gene (human)	ZNF497 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	19
Consensus	dATTRYTCWTMCSTTKMbd
GC content	37.64%
Information content (bits; total / per base)	17.906 / 0.942
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	9682
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	1.0	1.0	0.928	0.934	0.721	0.767
GFPIVT, 1 experiments	best	1.0	1.0	0.928	0.934	0.721	0.767

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	479.301	0.866	0.899	0.889
GFPIVT, 1 experiments	best	685.137	0.945	0.939	0.932

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.168
HGNC	HGNC:23714
MGI
EntrezGene (human)	GeneID:162968 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN497_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZNH5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF497.H13INVITRO.0.SG.A.pcm
PWM	ZNF497.H13INVITRO.0.SG.A.pwm
PFM	ZNF497.H13INVITRO.0.SG.A.pfm
Threshold to P-value map	ZNF497.H13INVITRO.0.SG.A.thr
Motif in other formats
JASPAR format	ZNF497.H13INVITRO.0.SG.A_jaspar_format.txt
MEME format	ZNF497.H13INVITRO.0.SG.A_meme_format.meme
Transfac format	ZNF497.H13INVITRO.0.SG.A_transfac_format.txt
Homer format	ZNF497.H13INVITRO.0.SG.A_homer_format_0.001.txt ZNF497.H13INVITRO.0.SG.A_homer_format_0.0005.txt ZNF497.H13INVITRO.0.SG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	4557.5	454.5	3482.5	1187.5
02	8589.0	302.0	486.0	305.0
03	39.0	2087.0	86.0	7470.0
04	103.0	150.0	525.0	8904.0
05	2191.0	369.0	7063.0	59.0
06	264.0	2742.0	51.0	6625.0
07	323.0	535.0	448.0	8376.0
08	270.0	8336.0	797.0	279.0
09	6658.0	355.0	785.0	1884.0
10	520.0	171.0	135.0	8856.0
11	2208.0	6638.0	639.0	197.0
12	17.0	6736.0	15.0	2914.0
13	680.0	2631.0	6248.0	123.0
14	328.0	412.0	610.0	8332.0
15	249.0	470.0	244.0	8719.0
16	420.0	404.0	2387.0	6471.0
17	6491.0	1719.0	809.0	663.0
18	648.0	5340.0	1663.0	2031.0
19	2208.5	888.5	2025.5	4559.5

PFM

	A	C	G	T
01	0.471	0.047	0.36	0.123
02	0.887	0.031	0.05	0.032
03	0.004	0.216	0.009	0.772
04	0.011	0.015	0.054	0.92
05	0.226	0.038	0.729	0.006
06	0.027	0.283	0.005	0.684
07	0.033	0.055	0.046	0.865
08	0.028	0.861	0.082	0.029
09	0.688	0.037	0.081	0.195
10	0.054	0.018	0.014	0.915
11	0.228	0.686	0.066	0.02
12	0.002	0.696	0.002	0.301
13	0.07	0.272	0.645	0.013
14	0.034	0.043	0.063	0.861
15	0.026	0.049	0.025	0.901
16	0.043	0.042	0.247	0.668
17	0.67	0.178	0.084	0.068
18	0.067	0.552	0.172	0.21
19	0.228	0.092	0.209	0.471

PWM

	A	C	G	T
01	0.632	-1.668	0.363	-0.711
02	1.266	-2.075	-1.602	-2.065
03	-4.072	-0.148	-3.312	1.126
04	-3.136	-2.767	-1.525	1.302
05	-0.1	-1.876	1.07	-3.677
06	-2.208	0.125	-3.817	1.006
07	-2.008	-1.506	-1.683	1.241
08	-2.186	1.236	-1.109	-2.153
09	1.011	-1.914	-1.124	-0.25
10	-1.534	-2.638	-2.871	1.296
11	-0.092	1.008	-1.329	-2.498
12	-4.833	1.023	-4.942	0.185
13	-1.267	0.083	0.948	-2.962
14	-1.993	-1.766	-1.375	1.235
15	-2.266	-1.635	-2.286	1.281
16	-1.747	-1.786	-0.014	0.983
17	0.986	-0.342	-1.094	-1.292
18	-1.315	0.791	-0.375	-0.175
19	-0.092	-1.001	-0.178	0.633

Standard thresholds

P-value	Threshold
0.001	1.92981
0.0005	3.15711
0.0001	5.75056