MotifZNF500.H13INVITRO.0.PSGI.A
Gene (human)ZNF500
(GeneCards)
Gene synonyms (human)KIAA0557, ZKSCAN18
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length18
ConsensusnvSCGTCTACACYdnhMn
GC content55.99%
Information content (bits; total / per base)20.18 / 1.121
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words797
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 2 (2) 0.586 0.598 0.499 0.516 0.636 0.669 28.931 43.367

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
GFPIVT, 1 experiments median 1.0 1.0 0.983 0.982 0.807 0.834
best 1.0 1.0 0.983 0.982 0.807 0.834

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 2 experiments median 16.739 0.715 0.714 0.617
best 121.638 0.895 0.845 0.765
Lysate, 1 experiments median 9.523 0.526 0.606 0.513
best 9.523 0.526 0.606 0.513
GFPIVT, 1 experiments median 21.167 0.881 0.822 0.722
best 121.638 0.895 0.845 0.765

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.995 0.993 0.968 0.961 0.853 0.855
best 0.995 0.993 0.968 0.961 0.853 0.855
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF500-like {2.3.3.19} (TFClass)
TFClass IDTFClass: 2.3.3.19.1
HGNCHGNC:23716
MGI
EntrezGene (human)GeneID:26048
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN500_HUMAN
UniProt ID (mouse)
UniProt AC (human)O60304
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 1
PBM 0
PCM
ACGT
01273.0237.0156.0131.0
02168.0431.0106.092.0
0379.0118.0541.059.0
042.0733.020.042.0
051.00.0796.00.0
060.00.00.0797.0
070.0797.00.00.0
080.02.00.0795.0
09797.00.00.00.0
100.0788.07.02.0
11797.00.00.00.0
121.0796.00.00.0
1329.0363.014.0391.0
14360.050.0121.0266.0
15182.0316.0164.0135.0
16225.0389.065.0118.0
17122.0493.078.0104.0
18187.0299.0153.0158.0
PFM
ACGT
010.3430.2970.1960.164
020.2110.5410.1330.115
030.0990.1480.6790.074
040.0030.920.0250.053
050.0010.00.9990.0
060.00.00.01.0
070.01.00.00.0
080.00.0030.00.997
091.00.00.00.0
100.00.9890.0090.003
111.00.00.00.0
120.0010.9990.00.0
130.0360.4550.0180.491
140.4520.0630.1520.334
150.2280.3960.2060.169
160.2820.4880.0820.148
170.1530.6190.0980.13
180.2350.3750.1920.198
PWM
ACGT
010.3130.172-0.242-0.415
02-0.1690.767-0.624-0.763
03-0.913-0.5180.994-1.197
04-4.0031.297-2.227-1.526
05-4.321-4.791.379-4.79
06-4.79-4.79-4.791.38
07-4.791.38-4.79-4.79
08-4.79-4.003-4.791.378
091.38-4.79-4.79-4.79
10-4.791.369-3.143-4.003
111.38-4.79-4.79-4.79
12-4.3211.379-4.79-4.79
13-1.880.596-2.5510.67
140.588-1.358-0.4930.287
15-0.090.458-0.193-0.385
160.1210.665-1.103-0.518
17-0.4850.901-0.925-0.643
18-0.0630.403-0.262-0.23
Standard thresholds
P-value Threshold
0.001 -1.91564
0.0005 -0.14999
0.0001 3.50956