ZNF510.H13CORE.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF510.H13CORE.0.PSG.A
Gene (human)	ZNF510 (GeneCards)
Gene synonyms (human)	KIAA0972
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	25
Consensus	nKKRWGMGGRWdSbdndRvRhbKdd
GC content	48.9%
Information content (bits; total / per base)	15.314 / 0.613
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	1743
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (4)	0.749	0.812	0.663	0.74	0.731	0.773	41.738	52.347

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.909	0.903	0.838	0.838	0.774	0.78
GFPIVT, 2 experiments	best	1.0	1.0	0.998	0.997	0.952	0.951

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	181.139	0.829	0.83	0.759
GFPIVT, 2 experiments	best	414.481	0.911	0.902	0.876

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF37A-like {2.3.4.25} (TFClass)
TFClass ID	TFClass: 2.3.4.25.6
HGNC	HGNC:29161
MGI
EntrezGene (human)	GeneID:22869 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN510_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9Y2H8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF510.H13CORE.0.PSG.A.pcm
PWM	ZNF510.H13CORE.0.PSG.A.pwm
PFM	ZNF510.H13CORE.0.PSG.A.pfm
Threshold to P-value map	ZNF510.H13CORE.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF510.H13CORE.0.PSG.A_jaspar_format.txt
MEME format	ZNF510.H13CORE.0.PSG.A_meme_format.meme
Transfac format	ZNF510.H13CORE.0.PSG.A_transfac_format.txt
Homer format	ZNF510.H13CORE.0.PSG.A_homer_format_0.001.txt ZNF510.H13CORE.0.PSG.A_homer_format_0.0005.txt ZNF510.H13CORE.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	568.25	493.25	440.25	241.25
02	195.25	137.25	232.25	1178.25
03	69.0	72.0	1356.0	246.0
04	1106.0	153.0	349.0	135.0
05	293.0	103.0	102.0	1245.0
06	15.0	3.0	1720.0	5.0
07	1176.0	442.0	67.0	58.0
08	105.0	1.0	1635.0	2.0
09	0.0	1.0	1741.0	1.0
10	837.0	73.0	742.0	91.0
11	1175.0	163.0	140.0	265.0
12	932.0	121.0	360.0	330.0
13	176.0	1085.0	304.0	178.0
14	247.0	288.0	454.0	754.0
15	857.0	187.0	373.0	326.0
16	410.0	583.0	320.0	430.0
17	624.0	135.0	186.0	798.0
18	1267.0	135.0	231.0	110.0
19	571.0	373.0	684.0	115.0
20	541.0	68.0	1073.0	61.0
21	1012.0	319.0	170.0	242.0
22	54.0	571.0	603.0	515.0
23	93.0	54.0	1098.0	498.0
24	239.75	127.75	360.75	1014.75
25	410.75	180.75	695.75	455.75

PFM

	A	C	G	T
01	0.326	0.283	0.253	0.138
02	0.112	0.079	0.133	0.676
03	0.04	0.041	0.778	0.141
04	0.635	0.088	0.2	0.077
05	0.168	0.059	0.059	0.714
06	0.009	0.002	0.987	0.003
07	0.675	0.254	0.038	0.033
08	0.06	0.001	0.938	0.001
09	0.0	0.001	0.999	0.001
10	0.48	0.042	0.426	0.052
11	0.674	0.094	0.08	0.152
12	0.535	0.069	0.207	0.189
13	0.101	0.622	0.174	0.102
14	0.142	0.165	0.26	0.433
15	0.492	0.107	0.214	0.187
16	0.235	0.334	0.184	0.247
17	0.358	0.077	0.107	0.458
18	0.727	0.077	0.133	0.063
19	0.328	0.214	0.392	0.066
20	0.31	0.039	0.616	0.035
21	0.581	0.183	0.098	0.139
22	0.031	0.328	0.346	0.295
23	0.053	0.031	0.63	0.286
24	0.138	0.073	0.207	0.582
25	0.236	0.104	0.399	0.261

PWM

	A	C	G	T
01	0.264	0.123	0.01	-0.588
02	-0.798	-1.146	-0.626	0.992
03	-1.821	-1.779	1.132	-0.568
04	0.929	-1.039	-0.221	-1.162
05	-0.395	-1.429	-1.438	1.047
06	-3.256	-4.499	1.37	-4.155
07	0.99	0.014	-1.849	-1.989
08	-1.41	-5.028	1.319	-4.729
09	-5.458	-5.028	1.382	-5.028
10	0.651	-1.766	0.531	-1.55
11	0.989	-0.976	-1.126	-0.495
12	0.758	-1.27	-0.19	-0.277
13	-0.9	0.91	-0.358	-0.889
14	-0.564	-0.412	0.041	0.547
15	0.674	-0.84	-0.155	-0.289
16	-0.061	0.29	-0.307	-0.013
17	0.358	-1.162	-0.846	0.603
18	1.065	-1.162	-0.631	-1.364
19	0.269	-0.155	0.449	-1.32
20	0.216	-1.835	0.899	-1.94
21	0.84	-0.31	-0.935	-0.585
22	-2.058	0.269	0.324	0.166
23	-1.529	-2.058	0.922	0.133
24	-0.594	-1.217	-0.188	0.843
25	-0.059	-0.874	0.466	0.045

Standard thresholds

P-value	Threshold
0.001	3.08276
0.0005	4.22441
0.0001	6.57106