ZNF510.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF510.H13INVITRO.0.PSG.A
Gene (human)	ZNF510 (GeneCards)
Gene synonyms (human)	KIAA0972
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	26
Consensus	nbddKvRGRRdvbdvKAMGAYGTbdn
GC content	48.78%
Information content (bits; total / per base)	16.101 / 0.619
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	712
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (4)	0.647	0.698	0.581	0.64	0.668	0.691	28.964	48.387

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.917	0.916	0.839	0.843	0.777	0.785
GFPIVT, 2 experiments	best	1.0	1.0	0.999	0.998	0.955	0.955

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	138.111	0.761	0.768	0.702
GFPIVT, 2 experiments	best	378.201	0.889	0.891	0.868

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF37A-like {2.3.4.25} (TFClass)
TFClass ID	TFClass: 2.3.4.25.6
HGNC	HGNC:29161
MGI
EntrezGene (human)	GeneID:22869 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN510_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9Y2H8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF510.H13INVITRO.0.PSG.A.pcm
PWM	ZNF510.H13INVITRO.0.PSG.A.pwm
PFM	ZNF510.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF510.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF510.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF510.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF510.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF510.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF510.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF510.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	155.0	121.0	186.0	250.0
02	61.75	76.75	336.75	236.75
03	260.0	73.0	267.0	112.0
04	222.0	65.0	124.0	301.0
05	64.0	22.0	442.0	184.0
06	278.0	123.0	250.0	61.0
07	203.0	52.0	430.0	27.0
08	50.0	9.0	629.0	24.0
09	260.0	51.0	367.0	34.0
10	430.0	39.0	196.0	47.0
11	370.0	64.0	134.0	144.0
12	140.0	398.0	114.0	60.0
13	117.0	143.0	132.0	320.0
14	333.0	68.0	186.0	125.0
15	174.0	304.0	175.0	59.0
16	53.0	46.0	87.0	526.0
17	632.0	6.0	38.0	36.0
18	426.0	175.0	62.0	49.0
19	22.0	2.0	687.0	1.0
20	697.0	0.0	8.0	7.0
21	9.0	420.0	32.0	251.0
22	9.0	4.0	694.0	5.0
23	62.0	32.0	20.0	598.0
24	55.0	65.0	303.0	289.0
25	243.25	84.25	294.25	90.25
26	165.25	164.25	229.25	153.25

PFM

	A	C	G	T
01	0.218	0.17	0.261	0.351
02	0.087	0.108	0.473	0.333
03	0.365	0.103	0.375	0.157
04	0.312	0.091	0.174	0.423
05	0.09	0.031	0.621	0.258
06	0.39	0.173	0.351	0.086
07	0.285	0.073	0.604	0.038
08	0.07	0.013	0.883	0.034
09	0.365	0.072	0.515	0.048
10	0.604	0.055	0.275	0.066
11	0.52	0.09	0.188	0.202
12	0.197	0.559	0.16	0.084
13	0.164	0.201	0.185	0.449
14	0.468	0.096	0.261	0.176
15	0.244	0.427	0.246	0.083
16	0.074	0.065	0.122	0.739
17	0.888	0.008	0.053	0.051
18	0.598	0.246	0.087	0.069
19	0.031	0.003	0.965	0.001
20	0.979	0.0	0.011	0.01
21	0.013	0.59	0.045	0.353
22	0.013	0.006	0.975	0.007
23	0.087	0.045	0.028	0.84
24	0.077	0.091	0.426	0.406
25	0.342	0.118	0.413	0.127
26	0.232	0.231	0.322	0.215

PWM

	A	C	G	T
01	-0.137	-0.382	0.044	0.337
02	-1.042	-0.829	0.633	0.283
03	0.376	-0.878	0.402	-0.458
04	0.219	-0.992	-0.358	0.522
05	-1.007	-2.028	0.904	0.033
06	0.443	-0.366	0.337	-1.054
07	0.13	-1.209	0.877	-1.836
08	-1.247	-2.826	1.256	-1.947
09	0.376	-1.227	0.719	-1.617
10	0.877	-1.486	0.095	-1.306
11	0.727	-1.007	-0.281	-0.21
12	-0.238	0.8	-0.44	-1.07
13	-0.415	-0.217	-0.296	0.582
14	0.622	-0.948	0.044	-0.35
15	-0.023	0.531	-0.017	-1.086
16	-1.19	-1.327	-0.706	1.077
17	1.261	-3.157	-1.511	-1.563
18	0.867	-0.017	-1.038	-1.266
19	-2.028	-3.898	1.344	-4.219
20	1.358	-4.695	-2.925	-3.034
21	-2.826	0.853	-1.675	0.341
22	-2.826	-3.461	1.354	-3.298
23	-1.038	-1.675	-2.116	1.205
24	-1.154	-0.992	0.528	0.481
25	0.31	-0.738	0.499	-0.67
26	-0.074	-0.08	0.251	-0.148

Standard thresholds

P-value	Threshold
0.001	2.84026
0.0005	3.98091
0.0001	6.37686