ZNF510.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF510.H13INVIVO.0.PSG.A
Gene (human)	ZNF510 (GeneCards)
Gene synonyms (human)	KIAA0972
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	24
Consensus	nKRvdGMGGRRdvnRvnRvRvnKb
GC content	58.93%
Information content (bits; total / per base)	12.428 / 0.518
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (4)	0.798	0.82	0.665	0.708	0.811	0.871	41.364	50.108

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.861	0.845	0.811	0.801	0.746	0.742
GFPIVT, 2 experiments	best	0.997	0.995	0.985	0.981	0.911	0.908

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	141.614	0.837	0.795	0.697
GFPIVT, 2 experiments	best	300.921	0.922	0.873	0.808

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF37A-like {2.3.4.25} (TFClass)
TFClass ID	TFClass: 2.3.4.25.6
HGNC	HGNC:29161
MGI
EntrezGene (human)	GeneID:22869 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN510_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9Y2H8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF510.H13INVIVO.0.PSG.A.pcm
PWM	ZNF510.H13INVIVO.0.PSG.A.pwm
PFM	ZNF510.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF510.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF510.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF510.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF510.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF510.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF510.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF510.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	82.0	267.0	82.0	69.0
02	61.0	24.0	120.0	295.0
03	51.0	17.0	391.0	41.0
04	188.0	178.0	120.0	14.0
05	156.0	30.0	64.0	250.0
06	3.0	8.0	482.0	7.0
07	265.0	171.0	11.0	53.0
08	115.0	3.0	377.0	5.0
09	2.0	7.0	490.0	1.0
10	181.0	39.0	266.0	14.0
11	318.0	69.0	86.0	27.0
12	181.0	34.0	200.0	85.0
13	60.0	277.0	126.0	37.0
14	98.0	148.0	106.0	148.0
15	167.0	27.0	268.0	38.0
16	94.0	210.0	160.0	36.0
17	127.0	63.0	153.0	157.0
18	228.0	32.0	221.0	19.0
19	209.0	74.0	179.0	38.0
20	109.0	26.0	334.0	31.0
21	241.0	52.0	172.0	35.0
22	87.0	84.0	171.0	158.0
23	61.0	54.0	306.0	79.0
24	56.0	101.0	191.0	152.0

PFM

	A	C	G	T
01	0.164	0.534	0.164	0.138
02	0.122	0.048	0.24	0.59
03	0.102	0.034	0.782	0.082
04	0.376	0.356	0.24	0.028
05	0.312	0.06	0.128	0.5
06	0.006	0.016	0.964	0.014
07	0.53	0.342	0.022	0.106
08	0.23	0.006	0.754	0.01
09	0.004	0.014	0.98	0.002
10	0.362	0.078	0.532	0.028
11	0.636	0.138	0.172	0.054
12	0.362	0.068	0.4	0.17
13	0.12	0.554	0.252	0.074
14	0.196	0.296	0.212	0.296
15	0.334	0.054	0.536	0.076
16	0.188	0.42	0.32	0.072
17	0.254	0.126	0.306	0.314
18	0.456	0.064	0.442	0.038
19	0.418	0.148	0.358	0.076
20	0.218	0.052	0.668	0.062
21	0.482	0.104	0.344	0.07
22	0.174	0.168	0.342	0.316
23	0.122	0.108	0.612	0.158
24	0.112	0.202	0.382	0.304

PWM

	A	C	G	T
01	-0.415	0.752	-0.415	-0.584
02	-0.705	-1.6	-0.04	0.852
03	-0.879	-1.92	1.132	-1.09
04	0.404	0.35	-0.04	-2.096
05	0.219	-1.389	-0.658	0.687
06	-3.325	-2.584	1.34	-2.694
07	0.745	0.31	-2.311	-0.841
08	-0.082	-3.325	1.096	-2.961
09	-3.573	-2.694	1.357	-3.903
10	0.366	-1.138	0.749	-2.096
11	0.926	-0.584	-0.368	-1.489
12	0.366	-1.27	0.465	-0.38
13	-0.721	0.789	0.008	-1.189
14	-0.24	0.167	-0.163	0.167
15	0.287	-1.489	0.756	-1.163
16	-0.281	0.514	0.244	-1.215
17	0.016	-0.673	0.2	0.225
18	0.595	-1.328	0.565	-1.818
19	0.509	-0.516	0.355	-1.163
20	-0.135	-1.525	0.975	-1.358
21	0.651	-0.86	0.316	-1.242
22	-0.357	-0.392	0.31	0.232
23	-0.705	-0.823	0.888	-0.452
24	-0.788	-0.21	0.42	0.193

Standard thresholds

P-value	Threshold
0.001	4.19451
0.0005	5.13296
0.0001	7.07406