| Motif | ZNF516.H13RSNP.0.S.D |
| Gene (human) | ZNF516 (GeneCards) |
| Gene synonyms (human) | KIAA0222 |
| Gene (mouse) | Znf516 |
| Gene synonyms (mouse) | Kiaa0222, Zfp516 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZNF516.H13RSNP.0.S.D |
| Gene (human) | ZNF516 (GeneCards) |
| Gene synonyms (human) | KIAA0222 |
| Gene (mouse) | Znf516 |
| Gene synonyms (mouse) | Kiaa0222, Zfp516 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | vYCAATGGvv |
| GC content | 50.31% |
| Information content (bits; total / per base) | 11.459 / 1.146 |
| Data sources | HT-SELEX |
| Aligned words | 6773 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 1 (1) | 0.609 | 0.609 | 0.499 | 0.499 | 0.573 | 0.573 | 0.292 | 0.292 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| GFPIVT, 1 experiments | median | 0.946 | 0.917 | 0.875 | 0.846 | 0.749 | 0.743 |
| best | 0.946 | 0.917 | 0.875 | 0.846 | 0.749 | 0.743 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | ZNF219-like {2.3.4.2} (TFClass) |
| TFClass ID | TFClass: 2.3.4.2.3 |
| HGNC | HGNC:28990 |
| MGI | MGI:2443957 |
| EntrezGene (human) | GeneID:9658 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:329003 (SSTAR profile) |
| UniProt ID (human) | ZN516_HUMAN |
| UniProt ID (mouse) | ZN516_MOUSE |
| UniProt AC (human) | Q92618 (TFClass) |
| UniProt AC (mouse) | Q7TSH3 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 1 overall: 0 Lysate, 0 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | ZNF516.H13RSNP.0.S.D.pcm |
| PWM | ZNF516.H13RSNP.0.S.D.pwm |
| PFM | ZNF516.H13RSNP.0.S.D.pfm |
| Threshold to P-value map | ZNF516.H13RSNP.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | ZNF516.H13RSNP.0.S.D_jaspar_format.txt |
| MEME format | ZNF516.H13RSNP.0.S.D_meme_format.meme |
| Transfac format | ZNF516.H13RSNP.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1219.5 | 1766.5 | 2645.5 | 1141.5 |
| 02 | 270.0 | 4238.0 | 428.0 | 1837.0 |
| 03 | 1631.0 | 5037.0 | 30.0 | 75.0 |
| 04 | 6771.0 | 0.0 | 1.0 | 1.0 |
| 05 | 4730.0 | 0.0 | 4.0 | 2039.0 |
| 06 | 1.0 | 0.0 | 0.0 | 6772.0 |
| 07 | 0.0 | 0.0 | 6773.0 | 0.0 |
| 08 | 0.0 | 0.0 | 6773.0 | 0.0 |
| 09 | 3868.0 | 1518.0 | 787.0 | 600.0 |
| 10 | 2259.0 | 2025.0 | 2052.0 | 437.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.18 | 0.261 | 0.391 | 0.169 |
| 02 | 0.04 | 0.626 | 0.063 | 0.271 |
| 03 | 0.241 | 0.744 | 0.004 | 0.011 |
| 04 | 1.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.698 | 0.0 | 0.001 | 0.301 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.0 | 0.0 | 1.0 | 0.0 |
| 08 | 0.0 | 0.0 | 1.0 | 0.0 |
| 09 | 0.571 | 0.224 | 0.116 | 0.089 |
| 10 | 0.334 | 0.299 | 0.303 | 0.065 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.328 | 0.042 | 0.446 | -0.394 |
| 02 | -1.829 | 0.917 | -1.371 | 0.081 |
| 03 | -0.037 | 1.089 | -3.964 | -3.089 |
| 04 | 1.385 | -6.645 | -6.271 | -6.271 |
| 05 | 1.026 | -6.645 | -5.61 | 0.186 |
| 06 | -6.271 | -6.645 | -6.645 | 1.385 |
| 07 | -6.645 | -6.645 | 1.385 | -6.645 |
| 08 | -6.645 | -6.645 | 1.385 | -6.645 |
| 09 | 0.825 | -0.109 | -0.765 | -1.035 |
| 10 | 0.288 | 0.179 | 0.192 | -1.351 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.46586 |
| 0.0005 | 5.575035 |
| 0.0001 | 7.7548 |