ZNF526.H13INVIVO.0.S.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF526.H13INVIVO.0.S.D
Gene (human)	ZNF526 (GeneCards)
Gene synonyms (human)	KIAA1951
Gene (mouse)	Znf526
Gene synonyms (mouse)	Kiaa1951, Zfp526
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	16
Consensus	hdhCAAGAGSGRCvhY
GC content	60.43%
Information content (bits; total / per base)	18.349 / 1.147
Data sources	HT-SELEX
Aligned words	6616
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.992	0.991	0.83	0.844	0.661	0.704
GFPIVT, 1 experiments	best	0.992	0.991	0.83	0.844	0.661	0.704

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF526-like {2.3.4.22} (TFClass)
TFClass ID	TFClass: 2.3.4.22.1
HGNC	HGNC:29415
MGI	MGI:2445181
EntrezGene (human)	GeneID:116115 (SSTAR profile)
EntrezGene (mouse)	GeneID:210172 (SSTAR profile)
UniProt ID (human)	ZN526_HUMAN
UniProt ID (mouse)	ZN526_MOUSE
UniProt AC (human)	Q8TF50 (TFClass)
UniProt AC (mouse)	Q8BI66 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF526.H13INVIVO.0.S.D.pcm
PWM	ZNF526.H13INVIVO.0.S.D.pwm
PFM	ZNF526.H13INVIVO.0.S.D.pfm
Threshold to P-value map	ZNF526.H13INVIVO.0.S.D.thr
Motif in other formats
JASPAR format	ZNF526.H13INVIVO.0.S.D_jaspar_format.txt
MEME format	ZNF526.H13INVIVO.0.S.D_meme_format.meme
Transfac format	ZNF526.H13INVIVO.0.S.D_transfac_format.txt
Homer format	ZNF526.H13INVIVO.0.S.D_homer_format_0.001.txt ZNF526.H13INVIVO.0.S.D_homer_format_0.0005.txt ZNF526.H13INVIVO.0.S.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2668.5	1397.5	895.5	1654.5
02	3239.0	459.0	1725.0	1193.0
03	893.0	2303.0	700.0	2720.0
04	1157.0	5278.0	109.0	72.0
05	6613.0	0.0	3.0	0.0
06	6616.0	0.0	0.0	0.0
07	0.0	0.0	6616.0	0.0
08	6616.0	0.0	0.0	0.0
09	3.0	0.0	6613.0	0.0
10	109.0	4463.0	2031.0	13.0
11	6.0	0.0	6610.0	0.0
12	969.0	404.0	4805.0	438.0
13	278.0	6204.0	80.0	54.0
14	861.0	1502.0	3466.0	787.0
15	2564.25	2811.25	371.25	869.25
16	666.75	4761.75	361.75	825.75

PFM

	A	C	G	T
01	0.403	0.211	0.135	0.25
02	0.49	0.069	0.261	0.18
03	0.135	0.348	0.106	0.411
04	0.175	0.798	0.016	0.011
05	1.0	0.0	0.0	0.0
06	1.0	0.0	0.0	0.0
07	0.0	0.0	1.0	0.0
08	1.0	0.0	0.0	0.0
09	0.0	0.0	1.0	0.0
10	0.016	0.675	0.307	0.002
11	0.001	0.0	0.999	0.0
12	0.146	0.061	0.726	0.066
13	0.042	0.938	0.012	0.008
14	0.13	0.227	0.524	0.119
15	0.388	0.425	0.056	0.131
16	0.101	0.72	0.055	0.125

PWM

	A	C	G	T
01	0.478	-0.168	-0.612	0.0
02	0.671	-1.278	0.042	-0.326
03	-0.615	0.331	-0.858	0.497
04	-0.357	1.159	-2.701	-3.106
05	1.385	-6.624	-5.764	-6.624
06	1.385	-6.624	-6.624	-6.624
07	-6.624	-6.624	1.385	-6.624
08	1.385	-6.624	-6.624	-6.624
09	-5.764	-6.624	1.385	-6.624
10	-2.701	0.992	0.205	-4.691
11	-5.308	-6.624	1.384	-6.624
12	-0.534	-1.405	1.066	-1.325
13	-1.777	1.321	-3.003	-3.383
14	-0.652	-0.096	0.739	-0.741
15	0.438	0.53	-1.489	-0.642
16	-0.907	1.057	-1.515	-0.693

Standard thresholds

P-value	Threshold
0.001	-2.20544
0.0005	-0.22774
0.0001	3.84136