ZNF532.H13INVITRO.0.SG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF532.H13INVITRO.0.SG.A
Gene (human)	ZNF532 (GeneCards)
Gene synonyms (human)	KIAA1629
Gene (mouse)	Znf532
Gene synonyms (mouse)	Kiaa1629, Zfp532
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	13
Consensus	vvRRWKGGTACMh
GC content	46.0%
Information content (bits; total / per base)	11.615 / 0.893
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	6229
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.95	0.922	0.882	0.849	0.796	0.77
GFPIVT, 1 experiments	best	0.95	0.922	0.882	0.849	0.796	0.77

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	25.921	0.519	0.696	0.523
GFPIVT, 1 experiments	best	40.237	0.521	0.72	0.527

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF532-like {2.3.4.9} (TFClass)
TFClass ID	TFClass: 2.3.4.9.1
HGNC	HGNC:30940
MGI	MGI:3036282
EntrezGene (human)	GeneID:55205 (SSTAR profile)
EntrezGene (mouse)	GeneID:328977 (SSTAR profile)
UniProt ID (human)	ZN532_HUMAN
UniProt ID (mouse)	ZN532_MOUSE
UniProt AC (human)	Q9HCE3 (TFClass)
UniProt AC (mouse)	Q6NXK2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF532.H13INVITRO.0.SG.A.pcm
PWM	ZNF532.H13INVITRO.0.SG.A.pwm
PFM	ZNF532.H13INVITRO.0.SG.A.pfm
Threshold to P-value map	ZNF532.H13INVITRO.0.SG.A.thr
Motif in other formats
JASPAR format	ZNF532.H13INVITRO.0.SG.A_jaspar_format.txt
MEME format	ZNF532.H13INVITRO.0.SG.A_meme_format.meme
Transfac format	ZNF532.H13INVITRO.0.SG.A_transfac_format.txt
Homer format	ZNF532.H13INVITRO.0.SG.A_homer_format_0.001.txt ZNF532.H13INVITRO.0.SG.A_homer_format_0.0005.txt ZNF532.H13INVITRO.0.SG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2704.25	1256.25	1212.25	1056.25
02	3350.25	1108.25	969.25	801.25
03	3808.0	803.0	985.0	633.0
04	3812.0	214.0	1490.0	713.0
05	3638.0	13.0	787.0	1791.0
06	735.0	23.0	3145.0	2326.0
07	0.0	0.0	6224.0	5.0
08	44.0	106.0	6023.0	56.0
09	0.0	1598.0	53.0	4578.0
10	6206.0	23.0	0.0	0.0
11	12.0	5611.0	48.0	558.0
12	2458.25	3246.25	265.25	259.25
13	1673.0	1431.0	613.0	2512.0

PFM

	A	C	G	T
01	0.434	0.202	0.195	0.17
02	0.538	0.178	0.156	0.129
03	0.611	0.129	0.158	0.102
04	0.612	0.034	0.239	0.114
05	0.584	0.002	0.126	0.288
06	0.118	0.004	0.505	0.373
07	0.0	0.0	0.999	0.001
08	0.007	0.017	0.967	0.009
09	0.0	0.257	0.009	0.735
10	0.996	0.004	0.0	0.0
11	0.002	0.901	0.008	0.09
12	0.395	0.521	0.043	0.042
13	0.269	0.23	0.098	0.403

PWM

	A	C	G	T
01	0.551	-0.214	-0.25	-0.388
02	0.765	-0.34	-0.473	-0.663
03	0.893	-0.661	-0.457	-0.898
04	0.894	-1.976	-0.044	-0.78
05	0.848	-4.632	-0.681	0.14
06	-0.749	-4.126	0.702	0.401
07	-6.571	-6.571	1.384	-5.38
08	-3.519	-2.668	1.352	-3.288
09	-6.571	0.026	-3.341	1.077
10	1.382	-4.126	-6.571	-6.571
11	-4.7	1.281	-3.436	-1.024
12	0.456	0.734	-1.763	-1.786
13	0.072	-0.084	-0.93	0.478

Standard thresholds

P-value	Threshold
0.001	4.12286
0.0005	5.322215
0.0001	7.486365