ZNF551.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF551.H13INVITRO.0.PSG.A
Gene (human)	ZNF551 (GeneCards)
Gene synonyms (human)	KOX23
Gene (mouse)	Znf551
Gene synonyms (mouse)	Zfp551
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	24
Consensus	nRRdMMhMMAMYAAAAACKhTGvn
GC content	45.5%
Information content (bits; total / per base)	20.805 / 0.867
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	2240
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.63	0.64	0.628	0.642	0.597	0.643	56.305	103.201

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.988	0.988	0.792	0.814	0.64	0.683
GFPIVT, 1 experiments	best	0.988	0.988	0.792	0.814	0.64	0.683

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	158.357	0.811	0.797	0.809
GFPIVT, 2 experiments	best	378.745	0.974	0.967	0.963

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.167
HGNC	HGNC:25108
MGI	MGI:3588205
EntrezGene (human)	GeneID:90233 (SSTAR profile)
EntrezGene (mouse)	GeneID:619331 (SSTAR profile)
UniProt ID (human)	ZN551_HUMAN
UniProt ID (mouse)	ZN551_MOUSE
UniProt AC (human)	Q7Z340 (TFClass)
UniProt AC (mouse)	B2RUI1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF551.H13INVITRO.0.PSG.A.pcm
PWM	ZNF551.H13INVITRO.0.PSG.A.pwm
PFM	ZNF551.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF551.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF551.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF551.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF551.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF551.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF551.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF551.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	401.5	636.5	453.5	748.5
02	285.0	170.0	1634.0	151.0
03	1541.0	180.0	368.0	151.0
04	274.0	264.0	1428.0	274.0
05	268.0	1619.0	225.0	128.0
06	808.0	1164.0	195.0	73.0
07	402.0	541.0	156.0	1141.0
08	412.0	1592.0	144.0	92.0
09	319.0	1578.0	36.0	307.0
10	1912.0	62.0	10.0	256.0
11	1559.0	612.0	31.0	38.0
12	591.0	649.0	7.0	993.0
13	2134.0	3.0	14.0	89.0
14	2142.0	17.0	8.0	73.0
15	2013.0	53.0	115.0	59.0
16	1723.0	21.0	27.0	469.0
17	2087.0	143.0	3.0	7.0
18	30.0	2201.0	4.0	5.0
19	118.0	142.0	1619.0	361.0
20	452.0	1308.0	237.0	243.0
21	119.0	109.0	104.0	1908.0
22	85.0	56.0	2028.0	71.0
23	476.25	878.25	574.25	311.25
24	768.5	691.5	347.5	432.5

PFM

	A	C	G	T
01	0.179	0.284	0.202	0.334
02	0.127	0.076	0.729	0.067
03	0.688	0.08	0.164	0.067
04	0.122	0.118	0.638	0.122
05	0.12	0.723	0.1	0.057
06	0.361	0.52	0.087	0.033
07	0.179	0.242	0.07	0.509
08	0.184	0.711	0.064	0.041
09	0.142	0.704	0.016	0.137
10	0.854	0.028	0.004	0.114
11	0.696	0.273	0.014	0.017
12	0.264	0.29	0.003	0.443
13	0.953	0.001	0.006	0.04
14	0.956	0.008	0.004	0.033
15	0.899	0.024	0.051	0.026
16	0.769	0.009	0.012	0.209
17	0.932	0.064	0.001	0.003
18	0.013	0.983	0.002	0.002
19	0.053	0.063	0.723	0.161
20	0.202	0.584	0.106	0.108
21	0.053	0.049	0.046	0.852
22	0.038	0.025	0.905	0.032
23	0.213	0.392	0.256	0.139
24	0.343	0.309	0.155	0.193

PWM

	A	C	G	T
01	-0.331	0.128	-0.21	0.289
02	-0.672	-1.184	1.069	-1.301
03	1.01	-1.128	-0.418	-1.301
04	-0.711	-0.748	0.934	-0.711
05	-0.733	1.059	-0.907	-1.464
06	0.366	0.73	-1.049	-2.015
07	-0.33	-0.034	-1.269	0.71
08	-0.306	1.043	-1.348	-1.789
09	-0.56	1.034	-2.696	-0.598
10	1.226	-2.174	-3.852	-0.779
11	1.022	0.089	-2.837	-2.644
12	0.054	0.147	-4.142	0.571
13	1.335	-4.736	-3.563	-1.821
14	1.339	-3.391	-4.036	-2.015
15	1.277	-2.325	-1.57	-2.222
16	1.122	-3.199	-2.967	-0.177
17	1.313	-1.355	-4.736	-4.142
18	-2.868	1.366	-4.552	-4.396
19	-1.544	-1.362	1.059	-0.437
20	-0.213	0.846	-0.855	-0.83
21	-1.536	-1.622	-1.669	1.223
22	-1.866	-2.272	1.284	-2.042
23	-0.161	0.449	0.025	-0.585
24	0.316	0.21	-0.475	-0.257

Standard thresholds

P-value	Threshold
0.001	0.42326
0.0005	1.80316
0.0001	4.72351