ZNF551.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF551.H13INVIVO.0.PSG.A
Gene (human)	ZNF551 (GeneCards)
Gene synonyms (human)	KOX23
Gene (mouse)	Znf551
Gene synonyms (mouse)	Zfp551
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	RRvRRMbvdGRAvRShRRRRY
GC content	53.74%
Information content (bits; total / per base)	12.902 / 0.614
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	1000
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.731	0.735	0.662	0.672	0.701	0.774	56.356	102.699

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.778	0.756	0.642	0.645	0.571	0.586
GFPIVT, 1 experiments	best	0.778	0.756	0.642	0.645	0.571	0.586

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	80.387	0.711	0.635	0.647
GFPIVT, 2 experiments	best	135.357	0.854	0.818	0.824

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.167
HGNC	HGNC:25108
MGI	MGI:3588205
EntrezGene (human)	GeneID:90233 (SSTAR profile)
EntrezGene (mouse)	GeneID:619331 (SSTAR profile)
UniProt ID (human)	ZN551_HUMAN
UniProt ID (mouse)	ZN551_MOUSE
UniProt AC (human)	Q7Z340 (TFClass)
UniProt AC (mouse)	B2RUI1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF551.H13INVIVO.0.PSG.A.pcm
PWM	ZNF551.H13INVIVO.0.PSG.A.pwm
PFM	ZNF551.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF551.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF551.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF551.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF551.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF551.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF551.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF551.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	663.0	85.0	143.0	109.0
02	607.0	77.0	276.0	40.0
03	580.0	212.0	134.0	74.0
04	640.0	87.0	153.0	120.0
05	614.0	100.0	229.0	57.0
06	171.0	647.0	116.0	66.0
07	109.0	213.0	162.0	516.0
08	138.0	513.0	254.0	95.0
09	191.0	49.0	244.0	516.0
10	83.0	17.0	868.0	32.0
11	172.0	51.0	756.0	21.0
12	802.0	83.0	94.0	21.0
13	103.0	548.0	279.0	70.0
14	612.0	70.0	239.0	79.0
15	72.0	729.0	117.0	82.0
16	143.0	420.0	118.0	319.0
17	259.0	83.0	638.0	20.0
18	765.0	64.0	132.0	39.0
19	260.0	13.0	699.0	28.0
20	83.0	80.0	782.0	55.0
21	83.0	633.0	79.0	205.0

PFM

	A	C	G	T
01	0.663	0.085	0.143	0.109
02	0.607	0.077	0.276	0.04
03	0.58	0.212	0.134	0.074
04	0.64	0.087	0.153	0.12
05	0.614	0.1	0.229	0.057
06	0.171	0.647	0.116	0.066
07	0.109	0.213	0.162	0.516
08	0.138	0.513	0.254	0.095
09	0.191	0.049	0.244	0.516
10	0.083	0.017	0.868	0.032
11	0.172	0.051	0.756	0.021
12	0.802	0.083	0.094	0.021
13	0.103	0.548	0.279	0.07
14	0.612	0.07	0.239	0.079
15	0.072	0.729	0.117	0.082
16	0.143	0.42	0.118	0.319
17	0.259	0.083	0.638	0.02
18	0.765	0.064	0.132	0.039
19	0.26	0.013	0.699	0.028
20	0.083	0.08	0.782	0.055
21	0.083	0.633	0.079	0.205

PWM

	A	C	G	T
01	0.971	-1.066	-0.553	-0.821
02	0.883	-1.162	0.098	-1.797
03	0.838	-0.164	-0.618	-1.201
04	0.936	-1.043	-0.487	-0.727
05	0.894	-0.906	-0.087	-1.455
06	-0.377	0.947	-0.76	-1.313
07	-0.821	-0.159	-0.43	0.721
08	-0.589	0.715	0.016	-0.956
09	-0.267	-1.602	-0.024	0.721
10	-1.089	-2.598	1.24	-2.01
11	-0.371	-1.563	1.102	-2.405
12	1.161	-1.089	-0.967	-2.405
13	-0.877	0.781	0.109	-1.255
14	0.891	-1.255	-0.045	-1.137
15	-1.228	1.066	-0.752	-1.101
16	-0.553	0.516	-0.743	0.242
17	0.035	-1.089	0.933	-2.45
18	1.114	-1.343	-0.633	-1.821
19	0.039	-2.839	1.024	-2.136
20	-1.089	-1.125	1.136	-1.49
21	-1.089	0.925	-1.137	-0.197

Standard thresholds

P-value	Threshold
0.001	4.08156
0.0005	4.98026
0.0001	6.89276