ZNF569.H13INVIVO.0.SG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF569.H13INVIVO.0.SG.D
Gene (human)	ZNF569 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf569
Gene synonyms (mouse)	Zfp74
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	26
Consensus	ddnGGASTAGTAKWMnWhnhhvWWMn
GC content	37.07%
Information content (bits; total / per base)	20.344 / 0.782
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	2224
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.999	0.998	0.949	0.95	0.779	0.811
GFPIVT, 2 experiments	best	0.999	0.998	0.987	0.984	0.857	0.871

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	313.276	0.753	0.767	0.716
GFPIVT, 2 experiments	best	363.699	0.763	0.778	0.725

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.215
HGNC	HGNC:24737
MGI	MGI:107784
EntrezGene (human)	GeneID:148266 (SSTAR profile)
EntrezGene (mouse)	GeneID:72723 (SSTAR profile)
UniProt ID (human)	ZN569_HUMAN
UniProt ID (mouse)	ZN569_MOUSE
UniProt AC (human)	Q5MCW4 (TFClass)
UniProt AC (mouse)	Q80W31 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF569.H13INVIVO.0.SG.D.pcm
PWM	ZNF569.H13INVIVO.0.SG.D.pwm
PFM	ZNF569.H13INVIVO.0.SG.D.pfm
Threshold to P-value map	ZNF569.H13INVIVO.0.SG.D.thr
Motif in other formats
JASPAR format	ZNF569.H13INVIVO.0.SG.D_jaspar_format.txt
MEME format	ZNF569.H13INVIVO.0.SG.D_meme_format.meme
Transfac format	ZNF569.H13INVIVO.0.SG.D_transfac_format.txt
Homer format	ZNF569.H13INVIVO.0.SG.D_homer_format_0.001.txt ZNF569.H13INVIVO.0.SG.D_homer_format_0.0005.txt ZNF569.H13INVIVO.0.SG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	944.25	376.25	480.25	423.25
02	1129.25	229.25	555.25	310.25
03	527.0	377.0	656.0	664.0
04	15.0	9.0	2191.0	9.0
05	46.0	0.0	2177.0	1.0
06	2119.0	95.0	6.0	4.0
07	239.0	1458.0	270.0	257.0
08	176.0	38.0	21.0	1989.0
09	2209.0	7.0	3.0	5.0
10	27.0	118.0	2070.0	9.0
11	5.0	30.0	1.0	2188.0
12	2213.0	7.0	1.0	3.0
13	64.0	309.0	1151.0	700.0
14	754.0	57.0	10.0	1403.0
15	1424.0	705.0	20.0	75.0
16	660.0	790.0	367.0	407.0
17	499.0	374.0	74.0	1277.0
18	904.0	628.0	309.0	383.0
19	636.0	502.0	628.0	458.0
20	491.0	471.0	242.0	1020.0
21	1209.0	494.0	217.0	304.0
22	1226.0	578.0	225.0	195.0
23	1415.0	133.0	149.0	527.0
24	1107.0	189.0	120.0	808.0
25	1427.25	307.25	254.25	235.25
26	795.5	461.5	496.5	470.5

PFM

	A	C	G	T
01	0.425	0.169	0.216	0.19
02	0.508	0.103	0.25	0.14
03	0.237	0.17	0.295	0.299
04	0.007	0.004	0.985	0.004
05	0.021	0.0	0.979	0.0
06	0.953	0.043	0.003	0.002
07	0.107	0.656	0.121	0.116
08	0.079	0.017	0.009	0.894
09	0.993	0.003	0.001	0.002
10	0.012	0.053	0.931	0.004
11	0.002	0.013	0.0	0.984
12	0.995	0.003	0.0	0.001
13	0.029	0.139	0.518	0.315
14	0.339	0.026	0.004	0.631
15	0.64	0.317	0.009	0.034
16	0.297	0.355	0.165	0.183
17	0.224	0.168	0.033	0.574
18	0.406	0.282	0.139	0.172
19	0.286	0.226	0.282	0.206
20	0.221	0.212	0.109	0.459
21	0.544	0.222	0.098	0.137
22	0.551	0.26	0.101	0.088
23	0.636	0.06	0.067	0.237
24	0.498	0.085	0.054	0.363
25	0.642	0.138	0.114	0.106
26	0.358	0.208	0.223	0.212

PWM

	A	C	G	T
01	0.528	-0.389	-0.146	-0.272
02	0.707	-0.881	-0.001	-0.581
03	-0.053	-0.387	0.165	0.177
04	-3.495	-3.933	1.369	-3.933
05	-2.455	-5.668	1.362	-5.25
06	1.335	-1.75	-4.254	-4.545
07	-0.84	0.962	-0.719	-0.768
08	-1.143	-2.637	-3.192	1.272
09	1.377	-4.135	-4.73	-4.389
10	-2.959	-1.537	1.312	-3.933
11	-4.389	-2.861	-5.25	1.367
12	1.379	-4.135	-5.25	-4.73
13	-2.136	-0.585	0.726	0.23
14	0.304	-2.248	-3.845	0.924
15	0.938	0.237	-3.237	-1.981
16	0.171	0.35	-0.414	-0.311
17	-0.108	-0.395	-1.994	0.83
18	0.485	0.121	-0.585	-0.371
19	0.134	-0.102	0.121	-0.193
20	-0.124	-0.165	-0.827	0.605
21	0.775	-0.118	-0.935	-0.601
22	0.789	0.039	-0.9	-1.041
23	0.932	-1.419	-1.307	-0.053
24	0.687	-1.072	-1.521	0.373
25	0.941	-0.59	-0.778	-0.855
26	0.357	-0.186	-0.113	-0.166

Standard thresholds

P-value	Threshold
0.001	-0.63239
0.0005	0.93881
0.0001	4.24741