ZNF57.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF57.H13INVIVO.0.PSG.A
Gene (human)	ZNF57 (GeneCards)
Gene synonyms (human)	ZNF424
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	dRGKvvRGGGMGGRWRTWvhv
GC content	58.09%
Information content (bits; total / per base)	14.935 / 0.711
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.854	0.875	0.81	0.832	0.843	0.903	153.069	205.367

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.988	0.982	0.962	0.95	0.865	0.859
GFPIVT, 1 experiments	best	0.988	0.982	0.962	0.95	0.865	0.859

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	316.616	0.792	0.731	0.697
GFPIVT, 1 experiments	best	497.921	0.861	0.825	0.786

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.13
HGNC	HGNC:13125
MGI
EntrezGene (human)	GeneID:126295 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZNF57_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q68EA5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF57.H13INVIVO.0.PSG.A.pcm
PWM	ZNF57.H13INVIVO.0.PSG.A.pwm
PFM	ZNF57.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF57.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF57.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF57.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF57.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF57.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF57.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF57.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	197.0	73.0	154.0	76.0
02	233.0	14.0	203.0	50.0
03	23.0	13.0	437.0	27.0
04	60.0	47.0	314.0	79.0
05	112.0	59.0	272.0	57.0
06	140.0	191.0	114.0	55.0
07	75.0	6.0	356.0	63.0
08	11.0	1.0	448.0	40.0
09	57.0	2.0	412.0	29.0
10	48.0	13.0	400.0	39.0
11	387.0	44.0	31.0	38.0
12	45.0	1.0	423.0	31.0
13	52.0	6.0	435.0	7.0
14	110.0	30.0	331.0	29.0
15	167.0	13.0	12.0	308.0
16	97.0	26.0	358.0	19.0
17	13.0	40.0	27.0	420.0
18	295.0	21.0	60.0	124.0
19	180.0	186.0	76.0	58.0
20	159.0	172.0	44.0	125.0
21	220.0	65.0	169.0	46.0

PFM

	A	C	G	T
01	0.394	0.146	0.308	0.152
02	0.466	0.028	0.406	0.1
03	0.046	0.026	0.874	0.054
04	0.12	0.094	0.628	0.158
05	0.224	0.118	0.544	0.114
06	0.28	0.382	0.228	0.11
07	0.15	0.012	0.712	0.126
08	0.022	0.002	0.896	0.08
09	0.114	0.004	0.824	0.058
10	0.096	0.026	0.8	0.078
11	0.774	0.088	0.062	0.076
12	0.09	0.002	0.846	0.062
13	0.104	0.012	0.87	0.014
14	0.22	0.06	0.662	0.058
15	0.334	0.026	0.024	0.616
16	0.194	0.052	0.716	0.038
17	0.026	0.08	0.054	0.84
18	0.59	0.042	0.12	0.248
19	0.36	0.372	0.152	0.116
20	0.318	0.344	0.088	0.25
21	0.44	0.13	0.338	0.092

PWM

	A	C	G	T
01	0.45	-0.529	0.206	-0.49
02	0.617	-2.096	0.48	-0.898
03	-1.64	-2.163	1.243	-1.489
04	-0.721	-0.958	0.914	-0.452
05	-0.108	-0.737	0.771	-0.771
06	0.112	0.42	-0.091	-0.805
07	-0.503	-2.819	1.039	-0.673
08	-2.311	-3.903	1.268	-1.114
09	-0.771	-3.573	1.184	-1.421
10	-0.938	-2.163	1.155	-1.138
11	1.122	-1.022	-1.358	-1.163
12	-1.0	-3.903	1.21	-1.358
13	-0.86	-2.819	1.238	-2.694
14	-0.126	-1.389	0.966	-1.421
15	0.287	-2.163	-2.234	0.894
16	-0.25	-1.525	1.044	-1.818
17	-2.163	-1.114	-1.489	1.203
18	0.852	-1.725	-0.721	-0.008
19	0.361	0.393	-0.49	-0.754
20	0.238	0.316	-1.022	0.0
21	0.56	-0.643	0.298	-0.979

Standard thresholds

P-value	Threshold
0.001	3.48216
0.0005	4.49971
0.0001	6.65351