ZNF575.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF575.H13INVITRO.0.PSG.A
Gene (human)	ZNF575 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf575
Gene synonyms (mouse)	Zfp575
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	bRMRGCAGYRv
GC content	62.9%
Information content (bits; total / per base)	10.649 / 0.968
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	6440
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.904	0.904	0.873	0.875	0.861	0.865	91.441	112.137

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.79	0.791	0.653	0.663	0.586	0.6
GFPIVT, 1 experiments	best	0.79	0.791	0.653	0.663	0.586	0.6

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	380.62	0.943	0.97	0.953
GFPIVT, 1 experiments	best	710.796	0.952	0.974	0.953

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.37
HGNC	HGNC:27606
MGI	MGI:2141921
EntrezGene (human)	GeneID:284346 (SSTAR profile)
EntrezGene (mouse)	GeneID:101544 (SSTAR profile)
UniProt ID (human)	ZN575_HUMAN
UniProt ID (mouse)	ZN575_MOUSE
UniProt AC (human)	Q86XF7 (TFClass)
UniProt AC (mouse)	Q3TXZ1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF575.H13INVITRO.0.PSG.A.pcm
PWM	ZNF575.H13INVITRO.0.PSG.A.pwm
PFM	ZNF575.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF575.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF575.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF575.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF575.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF575.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF575.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF575.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	818.0	1293.0	842.0	3487.0
02	1292.5	209.5	4304.5	633.5
03	763.0	4986.0	339.0	352.0
04	1495.0	468.0	4477.0	0.0
05	1.0	0.0	6245.0	194.0
06	366.0	5482.0	0.0	592.0
07	6440.0	0.0	0.0	0.0
08	273.0	200.0	5814.0	153.0
09	222.0	4141.0	909.0	1168.0
10	4775.25	359.25	851.25	454.25
11	2007.0	1222.0	2418.0	793.0

PFM

	A	C	G	T
01	0.127	0.201	0.131	0.541
02	0.201	0.033	0.668	0.098
03	0.118	0.774	0.053	0.055
04	0.232	0.073	0.695	0.0
05	0.0	0.0	0.97	0.03
06	0.057	0.851	0.0	0.092
07	1.0	0.0	0.0	0.0
08	0.042	0.031	0.903	0.024
09	0.034	0.643	0.141	0.181
10	0.741	0.056	0.132	0.071
11	0.312	0.19	0.375	0.123

PWM

	A	C	G	T
01	-0.676	-0.219	-0.647	0.772
02	-0.219	-2.03	0.983	-0.931
03	-0.745	1.129	-1.553	-1.516
04	-0.074	-1.232	1.022	-6.6
05	-6.225	-6.6	1.355	-2.106
06	-1.477	1.224	-6.6	-0.998
07	1.385	-6.6	-6.6	-6.6
08	-1.768	-2.076	1.283	-2.341
09	-1.973	0.944	-0.571	-0.32
10	1.086	-1.495	-0.636	-1.262
11	0.22	-0.275	0.406	-0.707

Standard thresholds

P-value	Threshold
0.001	4.631085
0.0005	5.539115
0.0001	7.31264