ZNF575.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF575.H13INVIVO.0.PSG.A
Gene (human)	ZNF575 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf575
Gene synonyms (mouse)	Zfp575
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	17
Consensus	nhRSYGCGGCAGCARhn
GC content	63.4%
Information content (bits; total / per base)	17.596 / 1.035
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	1912
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.91	0.913	0.879	0.881	0.876	0.878	101.773	122.824

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.788	0.795	0.643	0.661	0.574	0.594
GFPIVT, 1 experiments	best	0.788	0.795	0.643	0.661	0.574	0.594

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	446.027	0.96	0.969	0.947
GFPIVT, 1 experiments	best	766.886	0.968	0.974	0.953

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.37
HGNC	HGNC:27606
MGI	MGI:2141921
EntrezGene (human)	GeneID:284346 (SSTAR profile)
EntrezGene (mouse)	GeneID:101544 (SSTAR profile)
UniProt ID (human)	ZN575_HUMAN
UniProt ID (mouse)	ZN575_MOUSE
UniProt AC (human)	Q86XF7 (TFClass)
UniProt AC (mouse)	Q3TXZ1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF575.H13INVIVO.0.PSG.A.pcm
PWM	ZNF575.H13INVIVO.0.PSG.A.pwm
PFM	ZNF575.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF575.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF575.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF575.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF575.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF575.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF575.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF575.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	275.0	501.0	714.0	422.0
02	258.5	444.5	214.5	994.5
03	724.0	68.0	920.0	200.0
04	85.0	1089.0	510.0	228.0
05	97.0	371.0	67.0	1377.0
06	104.0	9.0	1771.0	28.0
07	22.0	1868.0	15.0	7.0
08	473.0	52.0	1383.0	4.0
09	0.0	0.0	1907.0	5.0
10	19.0	1861.0	1.0	31.0
11	1911.0	0.0	1.0	0.0
12	8.0	1.0	1902.0	1.0
13	22.0	1520.0	23.0	347.0
14	1818.0	17.0	56.0	21.0
15	559.0	266.0	1021.0	66.0
16	270.75	786.75	222.75	631.75
17	571.5	428.5	597.5	314.5

PFM

	A	C	G	T
01	0.144	0.262	0.373	0.221
02	0.135	0.232	0.112	0.52
03	0.379	0.036	0.481	0.105
04	0.044	0.57	0.267	0.119
05	0.051	0.194	0.035	0.72
06	0.054	0.005	0.926	0.015
07	0.012	0.977	0.008	0.004
08	0.247	0.027	0.723	0.002
09	0.0	0.0	0.997	0.003
10	0.01	0.973	0.001	0.016
11	0.999	0.0	0.001	0.0
12	0.004	0.001	0.995	0.001
13	0.012	0.795	0.012	0.181
14	0.951	0.009	0.029	0.011
15	0.292	0.139	0.534	0.035
16	0.142	0.411	0.117	0.33
17	0.299	0.224	0.313	0.164

PWM

	A	C	G	T
01	-0.55	0.047	0.4	-0.124
02	-0.611	-0.072	-0.796	0.731
03	0.414	-1.927	0.653	-0.866
04	-1.709	0.821	0.065	-0.736
05	-1.58	-0.252	-1.941	1.055
06	-1.511	-3.786	1.307	-2.776
07	-3.0	1.36	-3.347	-3.989
08	-0.01	-2.187	1.06	-4.4
09	-5.538	-5.538	1.381	-4.244
10	-3.134	1.356	-5.113	-2.68
11	1.383	-5.538	-5.113	-5.538
12	-3.882	-5.113	1.378	-5.113
13	-3.0	1.154	-2.959	-0.319
14	1.333	-3.235	-2.115	-3.043
15	0.156	-0.583	0.757	-1.956
16	-0.565	0.497	-0.759	0.278
17	0.178	-0.109	0.222	-0.417

Standard thresholds

P-value	Threshold
0.001	0.71021
0.0005	2.21286
0.0001	5.35346