ZNF587B.H13RSNP.0.SG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF587B.H13RSNP.0.SG.D
Gene (human)	ZNF587B (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	vhhGGACASTGdSd
GC content	60.61%
Information content (bits; total / per base)	14.467 / 1.033
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	8113
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.971	0.961	0.899	0.881	0.775	0.772
GFPIVT, 1 experiments	best	0.971	0.961	0.899	0.881	0.775	0.772

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	768.854	0.95	0.995	0.994
GFPIVT, 1 experiments	best	846.638	0.963	0.998	0.996

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF417-like {2.3.4.1} (TFClass)
TFClass ID	TFClass: 2.3.4.1.8
HGNC	HGNC:37142
MGI
EntrezGene (human)	GeneID:100293516 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	Z587B_HUMAN
UniProt ID (mouse)
UniProt AC (human)	E7ETH6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF587B.H13RSNP.0.SG.D.pcm
PWM	ZNF587B.H13RSNP.0.SG.D.pwm
PFM	ZNF587B.H13RSNP.0.SG.D.pfm
Threshold to P-value map	ZNF587B.H13RSNP.0.SG.D.thr
Motif in other formats
JASPAR format	ZNF587B.H13RSNP.0.SG.D_jaspar_format.txt
MEME format	ZNF587B.H13RSNP.0.SG.D_meme_format.meme
Transfac format	ZNF587B.H13RSNP.0.SG.D_transfac_format.txt
Homer format	ZNF587B.H13RSNP.0.SG.D_homer_format_0.001.txt ZNF587B.H13RSNP.0.SG.D_homer_format_0.0005.txt ZNF587B.H13RSNP.0.SG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1508.5	1248.5	4488.5	867.5
02	2966.5	1806.5	805.5	2534.5
03	1200.0	4471.0	1156.0	1286.0
04	121.0	479.0	7429.0	84.0
05	185.0	252.0	7081.0	595.0
06	7029.0	242.0	799.0	43.0
07	1.0	7979.0	4.0	129.0
08	8110.0	0.0	3.0	0.0
09	21.0	4462.0	3238.0	392.0
10	0.0	13.0	0.0	8100.0
11	32.0	7.0	8073.0	1.0
12	2228.0	755.0	4359.0	771.0
13	1057.25	4221.25	2728.25	106.25
14	1301.25	1123.25	1616.25	4072.25

PFM

	A	C	G	T
01	0.186	0.154	0.553	0.107
02	0.366	0.223	0.099	0.312
03	0.148	0.551	0.142	0.159
04	0.015	0.059	0.916	0.01
05	0.023	0.031	0.873	0.073
06	0.866	0.03	0.098	0.005
07	0.0	0.983	0.0	0.016
08	1.0	0.0	0.0	0.0
09	0.003	0.55	0.399	0.048
10	0.0	0.002	0.0	0.998
11	0.004	0.001	0.995	0.0
12	0.275	0.093	0.537	0.095
13	0.13	0.52	0.336	0.013
14	0.16	0.138	0.199	0.502

PWM

	A	C	G	T
01	-0.296	-0.485	0.794	-0.848
02	0.38	-0.116	-0.922	0.223
03	-0.524	0.79	-0.561	-0.455
04	-2.802	-1.44	1.297	-3.159
05	-2.384	-2.078	1.249	-1.224
06	1.242	-2.118	-0.93	-3.804
07	-6.437	1.369	-5.783	-2.739
08	1.385	-6.805	-5.958	-6.805
09	-4.47	0.788	0.467	-1.639
10	-6.805	-4.891	-6.805	1.384
11	-4.082	-5.391	1.381	-6.437
12	0.094	-0.986	0.764	-0.965
13	-0.65	0.732	0.296	-2.929
14	-0.443	-0.59	-0.227	0.696

Standard thresholds

P-value	Threshold
0.001	2.34466
0.0005	3.80421
0.0001	6.69251