ZNF606.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF606.H13INVITRO.0.PSG.A
Gene (human)	ZNF606 (GeneCards)
Gene synonyms (human)	KIAA1852, ZNF328
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	16
Consensus	vRhGGAAACCGMdvMn
GC content	61.63%
Information content (bits; total / per base)	18.32 / 1.145
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	438
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (3)	0.606	0.625	0.544	0.575	0.793	0.919	49.367	170.004

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.856	0.858	0.666	0.693	0.569	0.607
GFPIVT, 1 experiments	best	0.856	0.858	0.666	0.693	0.569	0.607

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	313.299	0.818	0.857	0.846
GFPIVT, 2 experiments	best	467.678	0.921	0.923	0.92

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.67
HGNC	HGNC:25879
MGI
EntrezGene (human)	GeneID:80095 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN606_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8WXB4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF606.H13INVITRO.0.PSG.A.pcm
PWM	ZNF606.H13INVITRO.0.PSG.A.pwm
PFM	ZNF606.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF606.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF606.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF606.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF606.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF606.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF606.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF606.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	96.25	175.25	97.25	69.25
02	104.5	26.5	261.5	45.5
03	193.0	135.0	14.0	96.0
04	13.0	2.0	421.0	2.0
05	0.0	0.0	438.0	0.0
06	438.0	0.0	0.0	0.0
07	436.0	0.0	2.0	0.0
08	438.0	0.0	0.0	0.0
09	0.0	438.0	0.0	0.0
10	0.0	438.0	0.0	0.0
11	0.0	0.0	437.0	1.0
12	73.0	293.0	0.0	72.0
13	53.0	51.0	180.0	154.0
14	109.0	174.0	112.0	43.0
15	58.0	300.0	44.0	36.0
16	77.25	156.25	123.25	81.25

PFM

	A	C	G	T
01	0.22	0.4	0.222	0.158
02	0.239	0.061	0.597	0.104
03	0.441	0.308	0.032	0.219
04	0.03	0.005	0.961	0.005
05	0.0	0.0	1.0	0.0
06	1.0	0.0	0.0	0.0
07	0.995	0.0	0.005	0.0
08	1.0	0.0	0.0	0.0
09	0.0	1.0	0.0	0.0
10	0.0	1.0	0.0	0.0
11	0.0	0.0	0.998	0.002
12	0.167	0.669	0.0	0.164
13	0.121	0.116	0.411	0.352
14	0.249	0.397	0.256	0.098
15	0.132	0.685	0.1	0.082
16	0.176	0.357	0.281	0.186

PWM

	A	C	G	T
01	-0.127	0.465	-0.117	-0.45
02	-0.046	-1.377	0.863	-0.859
03	0.561	0.207	-1.968	-0.13
04	-2.034	-3.451	1.337	-3.451
05	-4.291	-4.291	1.376	-4.291
06	1.376	-4.291	-4.291	-4.291
07	1.371	-4.291	-3.451	-4.291
08	1.376	-4.291	-4.291	-4.291
09	-4.291	1.376	-4.291	-4.291
10	-4.291	1.376	-4.291	-4.291
11	-4.291	-4.291	1.374	-3.785
12	-0.399	0.976	-4.291	-0.412
13	-0.711	-0.749	0.492	0.337
14	-0.005	0.458	0.022	-0.914
15	-0.623	0.999	-0.892	-1.085
16	-0.343	0.351	0.117	-0.294

Standard thresholds

P-value	Threshold
0.001	0.15891
0.0005	1.57741
0.0001	5.10376