ZNF606.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF606.H13INVIVO.0.PSG.A
Gene (human)	ZNF606 (GeneCards)
Gene synonyms (human)	KIAA1852, ZNF328
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	19
Consensus	bRRvhGAGGAAACCGAGRM
GC content	58.49%
Information content (bits; total / per base)	22.182 / 1.167
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	449
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	3 (3)	0.939	0.967	0.907	0.945	0.899	0.989	73.187	252.377

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.779	0.77	0.637	0.649	0.565	0.586
GFPIVT, 1 experiments	best	0.779	0.77	0.637	0.649	0.565	0.586

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	295.625	0.839	0.804	0.825
GFPIVT, 2 experiments	best	445.31	0.928	0.913	0.916

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.67
HGNC	HGNC:25879
MGI
EntrezGene (human)	GeneID:80095 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN606_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8WXB4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF606.H13INVIVO.0.PSG.A.pcm
PWM	ZNF606.H13INVIVO.0.PSG.A.pwm
PFM	ZNF606.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF606.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF606.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF606.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF606.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF606.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF606.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF606.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	57.0	230.0	69.0	93.0
02	280.0	47.0	77.0	45.0
03	62.0	23.0	350.0	14.0
04	240.0	66.0	94.0	49.0
05	59.0	68.0	54.0	268.0
06	20.0	11.0	416.0	2.0
07	388.0	19.0	17.0	25.0
08	9.0	1.0	439.0	0.0
09	2.0	3.0	443.0	1.0
10	444.0	0.0	0.0	5.0
11	334.0	6.0	108.0	1.0
12	436.0	3.0	10.0	0.0
13	4.0	439.0	3.0	3.0
14	9.0	427.0	2.0	11.0
15	9.0	3.0	425.0	12.0
16	358.0	42.0	4.0	45.0
17	61.0	9.0	364.0	15.0
18	47.0	40.0	350.0	12.0
19	67.0	283.0	45.0	54.0

PFM

	A	C	G	T
01	0.127	0.512	0.154	0.207
02	0.624	0.105	0.171	0.1
03	0.138	0.051	0.78	0.031
04	0.535	0.147	0.209	0.109
05	0.131	0.151	0.12	0.597
06	0.045	0.024	0.927	0.004
07	0.864	0.042	0.038	0.056
08	0.02	0.002	0.978	0.0
09	0.004	0.007	0.987	0.002
10	0.989	0.0	0.0	0.011
11	0.744	0.013	0.241	0.002
12	0.971	0.007	0.022	0.0
13	0.009	0.978	0.007	0.007
14	0.02	0.951	0.004	0.024
15	0.02	0.007	0.947	0.027
16	0.797	0.094	0.009	0.1
17	0.136	0.02	0.811	0.033
18	0.105	0.089	0.78	0.027
19	0.149	0.63	0.1	0.12

PWM

	A	C	G	T
01	-0.665	0.71	-0.478	-0.185
02	0.906	-0.852	-0.371	-0.894
03	-0.583	-1.534	1.128	-1.992
04	0.753	-0.522	-0.175	-0.812
05	-0.631	-0.493	-0.717	0.862
06	-1.665	-2.206	1.3	-3.474
07	1.231	-1.713	-1.815	-1.456
08	-2.38	-3.807	1.354	-4.311
09	-3.474	-3.224	1.363	-3.807
10	1.365	-4.311	-4.311	-2.858
11	1.081	-2.716	-0.038	-3.807
12	1.347	-3.224	-2.29	-4.311
13	-3.025	1.354	-3.224	-3.224
14	-2.38	1.326	-3.474	-2.206
15	-2.38	-3.224	1.321	-2.13
16	1.151	-0.961	-3.025	-0.894
17	-0.599	-2.38	1.167	-1.929
18	-0.852	-1.008	1.128	-2.13
19	-0.507	0.917	-0.894	-0.717

Standard thresholds

P-value	Threshold
0.001	-0.39194
0.0005	1.05911
0.0001	4.14671