ZNF618.H13INVITRO.0.G.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF618.H13INVITRO.0.G.B
Gene (human)	ZNF618 (GeneCards)
Gene synonyms (human)	KIAA1952
Gene (mouse)	Znf618
Gene synonyms (mouse)	Kiaa1952, Zfp618
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	20
Consensus	MWWWWhWTTKMAvWWTdnMA
GC content	20.16%
Information content (bits; total / per base)	16.276 / 0.814
Data sources	Genomic HT-SELEX
Aligned words	94
Previous names

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
Lysate, 2 experiments	median	29.803	0.619	0.704	0.704
Lysate, 2 experiments	best	32.268	0.72	0.814	0.816

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.18
HGNC	HGNC:29416
MGI	MGI:1919950
EntrezGene (human)	GeneID:114991 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN618_HUMAN
UniProt ID (mouse)	ZN618_MOUSE
UniProt AC (human)	Q5T7W0 (TFClass)
UniProt AC (mouse)	Q80YY7 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	2 overall: 2 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF618.H13INVITRO.0.G.B.pcm
PWM	ZNF618.H13INVITRO.0.G.B.pwm
PFM	ZNF618.H13INVITRO.0.G.B.pfm
Threshold to P-value map	ZNF618.H13INVITRO.0.G.B.thr
Motif in other formats
JASPAR format	ZNF618.H13INVITRO.0.G.B_jaspar_format.txt
MEME format	ZNF618.H13INVITRO.0.G.B_meme_format.meme
Transfac format	ZNF618.H13INVITRO.0.G.B_transfac_format.txt
Homer format	ZNF618.H13INVITRO.0.G.B_homer_format_0.001.txt ZNF618.H13INVITRO.0.G.B_homer_format_0.0005.txt ZNF618.H13INVITRO.0.G.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	54.0	28.0	8.0	4.0
02	62.0	9.0	2.0	21.0
03	51.0	2.0	11.0	30.0
04	60.0	2.0	12.0	20.0
05	56.0	3.0	14.0	21.0
06	39.0	11.0	6.0	38.0
07	18.0	6.0	0.0	70.0
08	0.0	1.0	2.0	91.0
09	1.0	0.0	27.0	66.0
10	2.0	1.0	35.0	56.0
11	57.0	36.0	1.0	0.0
12	91.0	0.0	3.0	0.0
13	63.0	14.0	14.0	3.0
14	44.0	9.0	5.0	36.0
15	19.0	2.0	8.0	65.0
16	9.0	0.0	3.0	82.0
17	12.0	6.0	27.0	49.0
18	31.0	30.0	3.0	30.0
19	46.0	34.0	0.0	14.0
20	84.0	4.0	0.0	6.0

PFM

	A	C	G	T
01	0.574	0.298	0.085	0.043
02	0.66	0.096	0.021	0.223
03	0.543	0.021	0.117	0.319
04	0.638	0.021	0.128	0.213
05	0.596	0.032	0.149	0.223
06	0.415	0.117	0.064	0.404
07	0.191	0.064	0.0	0.745
08	0.0	0.011	0.021	0.968
09	0.011	0.0	0.287	0.702
10	0.021	0.011	0.372	0.596
11	0.606	0.383	0.011	0.0
12	0.968	0.0	0.032	0.0
13	0.67	0.149	0.149	0.032
14	0.468	0.096	0.053	0.383
15	0.202	0.021	0.085	0.691
16	0.096	0.0	0.032	0.872
17	0.128	0.064	0.287	0.521
18	0.33	0.319	0.032	0.319
19	0.489	0.362	0.0	0.149
20	0.894	0.043	0.0	0.064

PWM

	A	C	G	T
01	0.806	0.168	-0.992	-1.568
02	0.941	-0.888	-2.061	-0.107
03	0.75	-2.061	-0.708	0.234
04	0.909	-2.061	-0.629	-0.153
05	0.841	-1.785	-0.487	-0.107
06	0.488	-0.708	-1.239	0.463
07	-0.253	-1.239	-3.077	1.06
08	-3.077	-2.445	-2.061	1.319
09	-2.445	-3.077	0.133	1.003
10	-2.061	-2.445	0.383	0.841
11	0.859	0.41	-2.445	-3.077
12	1.319	-3.077	-1.785	-3.077
13	0.957	-0.487	-0.487	-1.785
14	0.605	-0.888	-1.39	0.41
15	-0.202	-2.061	-0.992	0.988
16	-0.888	-3.077	-1.785	1.216
17	-0.629	-1.239	0.133	0.711
18	0.266	0.234	-1.785	0.234
19	0.649	0.355	-3.077	-0.487
20	1.24	-1.568	-3.077	-1.239

Standard thresholds

P-value	Threshold
0.001	3.39601
0.0005	4.45906
0.0001	6.68996