ZNF623.H13CORE.0.PG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF623.H13CORE.0.PG.A
Gene (human)	ZNF623 (GeneCards)
Gene synonyms (human)	KIAA0628
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	21
Consensus	YYbRCChCAGGRCCTTTGCAC
GC content	65.0%
Information content (bits; total / per base)	28.341 / 1.35
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	978
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.994	0.997	0.992	0.996	0.867	0.989	396.145	549.569

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	170.886	0.71	0.737	0.755
GFPIVT, 1 experiments	best	183.959	0.735	0.757	0.789

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.161
HGNC	HGNC:29084
MGI
EntrezGene (human)	GeneID:9831 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN623_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O75123 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF623.H13CORE.0.PG.A.pcm
PWM	ZNF623.H13CORE.0.PG.A.pwm
PFM	ZNF623.H13CORE.0.PG.A.pfm
Threshold to P-value map	ZNF623.H13CORE.0.PG.A.thr
Motif in other formats
JASPAR format	ZNF623.H13CORE.0.PG.A_jaspar_format.txt
MEME format	ZNF623.H13CORE.0.PG.A_meme_format.meme
Transfac format	ZNF623.H13CORE.0.PG.A_transfac_format.txt
Homer format	ZNF623.H13CORE.0.PG.A_homer_format_0.001.txt ZNF623.H13CORE.0.PG.A_homer_format_0.0005.txt ZNF623.H13CORE.0.PG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	36.0	674.0	113.0	155.0
02	64.0	739.0	45.0	130.0
03	107.0	194.0	120.0	557.0
04	332.0	17.0	613.0	16.0
05	11.0	908.0	29.0	30.0
06	6.0	950.0	6.0	16.0
07	175.0	331.0	38.0	434.0
08	0.0	972.0	2.0	4.0
09	849.0	31.0	65.0	33.0
10	3.0	2.0	966.0	7.0
11	9.0	3.0	938.0	28.0
12	171.0	58.0	738.0	11.0
13	8.0	955.0	0.0	15.0
14	41.0	921.0	3.0	13.0
15	3.0	38.0	3.0	934.0
16	1.0	5.0	5.0	967.0
17	8.0	8.0	74.0	888.0
18	12.0	9.0	945.0	12.0
19	16.0	914.0	15.0	33.0
20	877.0	43.0	28.0	30.0
21	15.0	800.0	31.0	132.0

PFM

	A	C	G	T
01	0.037	0.689	0.116	0.158
02	0.065	0.756	0.046	0.133
03	0.109	0.198	0.123	0.57
04	0.339	0.017	0.627	0.016
05	0.011	0.928	0.03	0.031
06	0.006	0.971	0.006	0.016
07	0.179	0.338	0.039	0.444
08	0.0	0.994	0.002	0.004
09	0.868	0.032	0.066	0.034
10	0.003	0.002	0.988	0.007
11	0.009	0.003	0.959	0.029
12	0.175	0.059	0.755	0.011
13	0.008	0.976	0.0	0.015
14	0.042	0.942	0.003	0.013
15	0.003	0.039	0.003	0.955
16	0.001	0.005	0.005	0.989
17	0.008	0.008	0.076	0.908
18	0.012	0.009	0.966	0.012
19	0.016	0.935	0.015	0.034
20	0.897	0.044	0.029	0.031
21	0.015	0.818	0.032	0.135

PWM

	A	C	G	T
01	-1.876	1.01	-0.764	-0.452
02	-1.321	1.101	-1.662	-0.626
03	-0.817	-0.23	-0.704	0.819
04	0.304	-2.577	0.915	-2.631
05	-2.963	1.307	-2.081	-2.049
06	-3.462	1.352	-3.462	-2.631
07	-0.332	0.301	-1.824	0.571
08	-4.963	1.375	-4.192	-3.762
09	1.24	-2.018	-1.306	-1.959
10	-3.954	-4.192	1.369	-3.34
11	-3.134	-3.954	1.339	-2.114
12	-0.355	-1.417	1.1	-2.963
13	-3.232	1.357	-4.963	-2.69
14	-1.752	1.321	-3.954	-2.817
15	-3.954	-1.824	-3.954	1.335
16	-4.505	-3.601	-3.601	1.37
17	-3.232	-3.232	-1.179	1.285
18	-2.887	-3.134	1.347	-2.887
19	-2.631	1.313	-2.69	-1.959
20	1.272	-1.706	-2.114	-2.049
21	-2.69	1.181	-2.018	-0.61

Standard thresholds

P-value	Threshold
0.001	-4.96929
0.0005	-3.22904
0.0001	0.50016