ZNF66.H13INVIVO.0.PG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF66.H13INVIVO.0.PG.A
Gene (human)	ZNF66 (GeneCards)
Gene synonyms (human)	ZNF66P
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	nSCWGCTSChb
GC content	62.69%
Information content (bits; total / per base)	9.513 / 0.865
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.706	0.706	0.57	0.57	0.593	0.593	7.161	7.161

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	35.721	0.605	0.642	0.517
GFPIVT, 1 experiments	best	73.0	0.618	0.654	0.544

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.65
HGNC	HGNC:13135
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZNF66_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZN08 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF66.H13INVIVO.0.PG.A.pcm
PWM	ZNF66.H13INVIVO.0.PG.A.pwm
PFM	ZNF66.H13INVIVO.0.PG.A.pfm
Threshold to P-value map	ZNF66.H13INVIVO.0.PG.A.thr
Motif in other formats
JASPAR format	ZNF66.H13INVIVO.0.PG.A_jaspar_format.txt
MEME format	ZNF66.H13INVIVO.0.PG.A_meme_format.meme
Transfac format	ZNF66.H13INVIVO.0.PG.A_transfac_format.txt
Homer format	ZNF66.H13INVIVO.0.PG.A_homer_format_0.001.txt ZNF66.H13INVIVO.0.PG.A_homer_format_0.0005.txt ZNF66.H13INVIVO.0.PG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	109.0	109.0	91.0	191.0
02	62.0	146.0	272.0	20.0
03	31.0	436.0	10.0	23.0
04	298.0	33.0	11.0	158.0
05	18.0	18.0	454.0	10.0
06	5.0	475.0	7.0	13.0
07	6.0	4.0	13.0	477.0
08	23.0	335.0	109.0	33.0
09	12.0	424.0	2.0	62.0
10	154.0	155.0	38.0	153.0
11	17.0	113.0	193.0	177.0

PFM

	A	C	G	T
01	0.218	0.218	0.182	0.382
02	0.124	0.292	0.544	0.04
03	0.062	0.872	0.02	0.046
04	0.596	0.066	0.022	0.316
05	0.036	0.036	0.908	0.02
06	0.01	0.95	0.014	0.026
07	0.012	0.008	0.026	0.954
08	0.046	0.67	0.218	0.066
09	0.024	0.848	0.004	0.124
10	0.308	0.31	0.076	0.306
11	0.034	0.226	0.386	0.354

PWM

	A	C	G	T
01	-0.135	-0.135	-0.313	0.42
02	-0.689	0.154	0.771	-1.77
03	-1.358	1.241	-2.394	-1.64
04	0.862	-1.298	-2.311	0.232
05	-1.868	-1.868	1.281	-2.394
06	-2.961	1.326	-2.694	-2.163
07	-2.819	-3.126	-2.163	1.33
08	-1.64	0.978	-0.135	-1.298
09	-2.234	1.213	-3.573	-0.689
10	0.206	0.213	-1.163	0.2
11	-1.92	-0.1	0.43	0.344

Standard thresholds

P-value	Threshold
0.001	4.835155
0.0005	5.665885
0.0001	7.26979