ZNF66.H13RSNP.0.PG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF66.H13RSNP.0.PG.D
Gene (human)	ZNF66 (GeneCards)
Gene synonyms (human)	ZNF66P
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	vMhRCTGCAYACMSh
GC content	56.93%
Information content (bits; total / per base)	14.522 / 0.968
Data sources	ChIP-Seq + Genomic HT-SELEX
Aligned words	324
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.611	0.611	0.437	0.437	0.596	0.596	0.854	0.854

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	66.237	0.74	0.793	0.706
GFPIVT, 1 experiments	best	117.194	0.754	0.793	0.714

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.65
HGNC	HGNC:13135
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ZNF66_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZN08 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF66.H13RSNP.0.PG.D.pcm
PWM	ZNF66.H13RSNP.0.PG.D.pwm
PFM	ZNF66.H13RSNP.0.PG.D.pfm
Threshold to P-value map	ZNF66.H13RSNP.0.PG.D.thr
Motif in other formats
JASPAR format	ZNF66.H13RSNP.0.PG.D_jaspar_format.txt
MEME format	ZNF66.H13RSNP.0.PG.D_meme_format.meme
Transfac format	ZNF66.H13RSNP.0.PG.D_transfac_format.txt
Homer format	ZNF66.H13RSNP.0.PG.D_homer_format_0.001.txt ZNF66.H13RSNP.0.PG.D_homer_format_0.0005.txt ZNF66.H13RSNP.0.PG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	77.0	48.0	173.0	26.0
02	58.0	226.0	17.0	23.0
03	92.0	130.0	19.0	83.0
04	86.0	67.0	168.0	3.0
05	45.0	276.0	0.0	3.0
06	3.0	3.0	0.0	318.0
07	5.0	22.0	294.0	3.0
08	1.0	321.0	0.0	2.0
09	305.0	9.0	3.0	7.0
10	15.0	103.0	20.0	186.0
11	259.0	41.0	6.0	18.0
12	28.0	268.0	13.0	15.0
13	254.0	42.0	8.0	20.0
14	21.0	186.0	111.0	6.0
15	66.0	178.0	15.0	65.0

PFM

	A	C	G	T
01	0.238	0.148	0.534	0.08
02	0.179	0.698	0.052	0.071
03	0.284	0.401	0.059	0.256
04	0.265	0.207	0.519	0.009
05	0.139	0.852	0.0	0.009
06	0.009	0.009	0.0	0.981
07	0.015	0.068	0.907	0.009
08	0.003	0.991	0.0	0.006
09	0.941	0.028	0.009	0.022
10	0.046	0.318	0.062	0.574
11	0.799	0.127	0.019	0.056
12	0.086	0.827	0.04	0.046
13	0.784	0.13	0.025	0.062
14	0.065	0.574	0.343	0.019
15	0.204	0.549	0.046	0.201

PWM

	A	C	G	T
01	-0.05	-0.511	0.749	-1.1
02	-0.327	1.015	-1.497	-1.216
03	0.125	0.466	-1.394	0.024
04	0.059	-0.186	0.72	-2.92
05	-0.574	1.213	-4.044	-2.92
06	-2.92	-2.92	-4.044	1.354
07	-2.549	-1.257	1.276	-2.92
08	-3.518	1.364	-4.044	-3.175
09	1.313	-2.066	-2.92	-2.279
10	-1.612	0.237	-1.347	0.821
11	1.15	-0.664	-2.405	-1.445
12	-1.03	1.184	-1.742	-1.612
13	1.131	-0.641	-2.167	-1.347
14	-1.301	0.821	0.31	-2.405
15	-0.201	0.778	-1.612	-0.216

Standard thresholds

P-value	Threshold
0.001	3.45776
0.0005	4.54051
0.0001	6.79561