ZNF665.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF665.H13INVITRO.0.PSG.A
Gene (human)	ZNF665 (GeneCards)
Gene synonyms (human)	ZFP160L
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	25
Consensus	dvRMdRbndhhYKCGASGhMvvddd
GC content	55.16%
Information content (bits; total / per base)	12.339 / 0.494
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	8452
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.767	0.776	0.701	0.706	0.742	0.798	69.524	117.509

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	0.996	0.996	0.951	0.949	0.841	0.847
GFPIVT, 2 experiments	best	0.999	0.999	0.991	0.989	0.924	0.92

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	178.753	0.717	0.769	0.724
GFPIVT, 2 experiments	best	284.367	0.803	0.816	0.776

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF665-like {2.3.3.76} (TFClass)
TFClass ID	TFClass: 2.3.3.76.1
HGNC	HGNC:25885
MGI
EntrezGene (human)	GeneID:79788 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN665_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9H7R5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF665.H13INVITRO.0.PSG.A.pcm
PWM	ZNF665.H13INVITRO.0.PSG.A.pwm
PFM	ZNF665.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF665.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF665.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF665.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF665.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF665.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF665.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF665.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1303.0	1231.0	3108.0	2810.0
02	2604.0	3586.0	1323.0	939.0
03	1795.0	878.0	5263.0	516.0
04	5657.0	1101.0	1089.0	605.0
05	3468.0	931.0	2125.0	1928.0
06	6274.0	535.0	1199.0	444.0
07	750.0	5067.0	1190.0	1445.0
08	1251.0	3131.0	1741.0	2329.0
09	1651.0	815.0	2477.0	3509.0
10	2403.0	4402.0	488.0	1159.0
11	1159.0	4288.0	559.0	2446.0
12	449.0	4150.0	219.0	3634.0
13	525.0	151.0	4310.0	3466.0
14	1198.0	6678.0	439.0	137.0
15	254.0	391.0	7729.0	78.0
16	7667.0	161.0	200.0	424.0
17	172.0	5863.0	1588.0	829.0
18	415.0	276.0	7618.0	143.0
19	1646.0	3706.0	1385.0	1715.0
20	2270.0	4911.0	441.0	830.0
21	2504.0	1859.0	3478.0	611.0
22	1864.0	3856.0	1396.0	1336.0
23	3807.0	1464.0	1644.0	1537.0
24	4188.75	1298.75	1602.75	1361.75
25	1808.75	1439.75	1778.75	3424.75

PFM

	A	C	G	T
01	0.154	0.146	0.368	0.332
02	0.308	0.424	0.157	0.111
03	0.212	0.104	0.623	0.061
04	0.669	0.13	0.129	0.072
05	0.41	0.11	0.251	0.228
06	0.742	0.063	0.142	0.053
07	0.089	0.6	0.141	0.171
08	0.148	0.37	0.206	0.276
09	0.195	0.096	0.293	0.415
10	0.284	0.521	0.058	0.137
11	0.137	0.507	0.066	0.289
12	0.053	0.491	0.026	0.43
13	0.062	0.018	0.51	0.41
14	0.142	0.79	0.052	0.016
15	0.03	0.046	0.914	0.009
16	0.907	0.019	0.024	0.05
17	0.02	0.694	0.188	0.098
18	0.049	0.033	0.901	0.017
19	0.195	0.438	0.164	0.203
20	0.269	0.581	0.052	0.098
21	0.296	0.22	0.412	0.072
22	0.221	0.456	0.165	0.158
23	0.45	0.173	0.195	0.182
24	0.496	0.154	0.19	0.161
25	0.214	0.17	0.21	0.405

PWM

	A	C	G	T
01	-0.483	-0.54	0.386	0.285
02	0.209	0.528	-0.468	-0.81
03	-0.163	-0.877	0.912	-1.406
04	0.984	-0.651	-0.662	-1.248
05	0.495	-0.818	0.006	-0.092
06	1.088	-1.37	-0.566	-1.556
07	-1.034	0.874	-0.573	-0.38
08	-0.523	0.393	-0.193	0.097
09	-0.246	-0.951	0.159	0.507
10	0.128	0.733	-1.462	-0.6
11	-0.6	0.707	-1.327	0.146
12	-1.545	0.674	-2.258	0.542
13	-1.389	-2.625	0.712	0.494
14	-0.567	1.15	-1.567	-2.721
15	-2.111	-1.682	1.296	-3.272
16	1.288	-2.562	-2.347	-1.602
17	-2.496	1.02	-0.285	-0.934
18	-1.623	-2.028	1.282	-2.678
19	-0.249	0.561	-0.422	-0.208
20	0.072	0.843	-1.563	-0.933
21	0.17	-0.128	0.498	-1.238
22	-0.125	0.601	-0.414	-0.458
23	0.588	-0.366	-0.251	-0.318
24	0.684	-0.486	-0.276	-0.439
25	-0.155	-0.383	-0.172	0.483

Standard thresholds

P-value	Threshold
0.001	4.14276
0.0005	5.05791
0.0001	6.98546