ZNF668.H13INVITRO.0.SG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF668.H13INVITRO.0.SG.A
Gene (human)	ZNF668 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf668
Gene synonyms (mouse)	Zfp668
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	18
Consensus	bbCWYTAGGACCYhGvdv
GC content	59.9%
Information content (bits; total / per base)	17.583 / 0.977
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	1000
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 2 experiments	median	1.0	1.0	1.0	1.0	0.99	0.99
GFPIVT, 2 experiments	best	1.0	1.0	1.0	1.0	0.997	0.997

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 2 experiments	median	792.586	0.959	0.97	0.96
GFPIVT, 2 experiments	best	967.77	0.979	0.985	0.976

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.50
HGNC	HGNC:25821
MGI	MGI:2442943
EntrezGene (human)	GeneID:79759 (SSTAR profile)
EntrezGene (mouse)	GeneID:244219 (SSTAR profile)
UniProt ID (human)	ZN668_HUMAN
UniProt ID (mouse)	ZN668_MOUSE
UniProt AC (human)	Q96K58 (TFClass)
UniProt AC (mouse)	Q8K2R5 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
Genomic HT-SELEX	2 overall: 0 Lysate, 0 IVT, 2 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF668.H13INVITRO.0.SG.A.pcm
PWM	ZNF668.H13INVITRO.0.SG.A.pwm
PFM	ZNF668.H13INVITRO.0.SG.A.pfm
Threshold to P-value map	ZNF668.H13INVITRO.0.SG.A.thr
Motif in other formats
JASPAR format	ZNF668.H13INVITRO.0.SG.A_jaspar_format.txt
MEME format	ZNF668.H13INVITRO.0.SG.A_meme_format.meme
Transfac format	ZNF668.H13INVITRO.0.SG.A_transfac_format.txt
Homer format	ZNF668.H13INVITRO.0.SG.A_homer_format_0.001.txt ZNF668.H13INVITRO.0.SG.A_homer_format_0.0005.txt ZNF668.H13INVITRO.0.SG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	102.0	228.0	512.0	158.0
02	151.0	246.0	417.0	186.0
03	37.0	842.0	31.0	90.0
04	212.0	61.0	126.0	601.0
05	13.0	448.0	37.0	502.0
06	18.0	42.0	9.0	931.0
07	914.0	4.0	57.0	25.0
08	81.0	0.0	880.0	39.0
09	1.0	1.0	998.0	0.0
10	953.0	1.0	46.0	0.0
11	2.0	995.0	0.0	3.0
12	9.0	988.0	1.0	2.0
13	83.0	777.0	35.0	105.0
14	523.0	114.0	94.0	269.0
15	77.0	54.0	811.0	58.0
16	191.0	362.0	346.0	101.0
17	369.0	119.0	386.0	126.0
18	161.0	131.0	583.0	125.0

PFM

	A	C	G	T
01	0.102	0.228	0.512	0.158
02	0.151	0.246	0.417	0.186
03	0.037	0.842	0.031	0.09
04	0.212	0.061	0.126	0.601
05	0.013	0.448	0.037	0.502
06	0.018	0.042	0.009	0.931
07	0.914	0.004	0.057	0.025
08	0.081	0.0	0.88	0.039
09	0.001	0.001	0.998	0.0
10	0.953	0.001	0.046	0.0
11	0.002	0.995	0.0	0.003
12	0.009	0.988	0.001	0.002
13	0.083	0.777	0.035	0.105
14	0.523	0.114	0.094	0.269
15	0.077	0.054	0.811	0.058
16	0.191	0.362	0.346	0.101
17	0.369	0.119	0.386	0.126
18	0.161	0.131	0.583	0.125

PWM

	A	C	G	T
01	-0.887	-0.091	0.713	-0.455
02	-0.5	-0.016	0.509	-0.293
03	-1.872	1.209	-2.04	-1.01
04	-0.164	-1.39	-0.678	0.873
05	-2.839	0.58	-1.872	0.694
06	-2.546	-1.75	-3.156	1.31
07	1.291	-3.783	-1.455	-2.243
08	-1.113	-4.982	1.254	-1.821
09	-4.525	-4.525	1.379	-4.982
10	1.333	-4.525	-1.663	-4.982
11	-4.213	1.376	-4.982	-3.975
12	-3.156	1.369	-4.525	-4.213
13	-1.089	1.129	-1.925	-0.858
14	0.735	-0.777	-0.967	0.073
15	-1.162	-1.508	1.172	-1.439
16	-0.267	0.368	0.323	-0.896
17	0.387	-0.735	0.432	-0.678
18	-0.436	-0.64	0.843	-0.686

Standard thresholds

P-value	Threshold
0.001	1.53586
0.0005	2.89701
0.0001	5.73641