ZNF672.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF672.H13INVITRO.0.PSG.A
Gene (human)	ZNF672 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf672
Gene synonyms (mouse)	Zfp672
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	26
Consensus	dndYKRCGGCAGGGGRdTKvYbdndd
GC content	60.32%
Information content (bits; total / per base)	23.337 / 0.898
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	1896
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.83	0.83	0.787	0.787	0.855	0.855	32.959	32.959

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	1.0	1.0	1.0	0.999	0.996	0.995
GFPIVT, 1 experiments	best	1.0	1.0	1.0	0.999	0.996	0.995

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	487.77	0.958	0.944	0.904
overall, 3 experiments	best	842.638	0.974	0.958	0.931
Lysate, 2 experiments	median	55.378	0.669	0.675	0.675
Lysate, 2 experiments	best	73.959	0.742	0.752	0.772
GFPIVT, 1 experiments	median	797.051	0.96	0.948	0.928
GFPIVT, 1 experiments	best	842.638	0.974	0.958	0.931

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF689-like {2.3.3.66} (TFClass)
TFClass ID	TFClass: 2.3.3.66.2
HGNC	HGNC:26179
MGI	MGI:2442105
EntrezGene (human)	GeneID:79894 (SSTAR profile)
EntrezGene (mouse)	GeneID:319475 (SSTAR profile)
UniProt ID (human)	ZN672_HUMAN
UniProt ID (mouse)	ZN672_MOUSE
UniProt AC (human)	Q499Z4 (TFClass)
UniProt AC (mouse)	Q99LH4 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF672.H13INVITRO.0.PSG.A.pcm
PWM	ZNF672.H13INVITRO.0.PSG.A.pwm
PFM	ZNF672.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	ZNF672.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF672.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	ZNF672.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	ZNF672.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	ZNF672.H13INVITRO.0.PSG.A_homer_format_0.001.txt ZNF672.H13INVITRO.0.PSG.A_homer_format_0.0005.txt ZNF672.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	318.25	262.25	885.25	430.25
02	499.0	461.0	452.0	484.0
03	816.0	130.0	519.0	431.0
04	102.0	1212.0	161.0	421.0
05	235.0	64.0	1200.0	397.0
06	1362.0	25.0	401.0	108.0
07	196.0	1627.0	52.0	21.0
08	40.0	13.0	1610.0	233.0
09	334.0	0.0	1560.0	2.0
10	1.0	1893.0	1.0	1.0
11	1894.0	0.0	0.0	2.0
12	0.0	4.0	1892.0	0.0
13	4.0	1.0	1890.0	1.0
14	2.0	0.0	1891.0	3.0
15	1.0	3.0	1878.0	14.0
16	1127.0	34.0	728.0	7.0
17	821.0	46.0	661.0	368.0
18	3.0	30.0	21.0	1842.0
19	237.0	37.0	1297.0	325.0
20	782.0	314.0	642.0	158.0
21	206.0	1228.0	122.0	340.0
22	228.0	289.0	1007.0	372.0
23	424.0	224.0	878.0	370.0
24	524.0	396.0	459.0	517.0
25	838.75	151.75	497.75	407.75
26	572.25	187.25	398.25	738.25

PFM

	A	C	G	T
01	0.168	0.138	0.467	0.227
02	0.263	0.243	0.238	0.255
03	0.43	0.069	0.274	0.227
04	0.054	0.639	0.085	0.222
05	0.124	0.034	0.633	0.209
06	0.718	0.013	0.211	0.057
07	0.103	0.858	0.027	0.011
08	0.021	0.007	0.849	0.123
09	0.176	0.0	0.823	0.001
10	0.001	0.998	0.001	0.001
11	0.999	0.0	0.0	0.001
12	0.0	0.002	0.998	0.0
13	0.002	0.001	0.997	0.001
14	0.001	0.0	0.997	0.002
15	0.001	0.002	0.991	0.007
16	0.594	0.018	0.384	0.004
17	0.433	0.024	0.349	0.194
18	0.002	0.016	0.011	0.972
19	0.125	0.02	0.684	0.171
20	0.412	0.166	0.339	0.083
21	0.109	0.648	0.064	0.179
22	0.12	0.152	0.531	0.196
23	0.224	0.118	0.463	0.195
24	0.276	0.209	0.242	0.273
25	0.442	0.08	0.263	0.215
26	0.302	0.099	0.21	0.389

PWM

	A	C	G	T
01	-0.396	-0.589	0.623	-0.096
02	0.051	-0.028	-0.047	0.021
03	0.542	-1.283	0.09	-0.095
04	-1.522	0.936	-1.072	-0.118
05	-0.698	-1.977	0.926	-0.177
06	1.053	-2.874	-0.167	-1.466
07	-0.877	1.23	-2.178	-3.035
08	-2.43	-3.465	1.22	-0.706
09	-0.348	-5.53	1.188	-4.808
10	-5.105	1.382	-5.105	-5.105
11	1.382	-5.53	-5.53	-4.808
12	-5.53	-4.392	1.381	-5.53
13	-4.392	-5.105	1.38	-5.105
14	-4.808	-5.53	1.381	-4.579
15	-5.105	-4.579	1.374	-3.4
16	0.864	-2.585	0.428	-3.981
17	0.548	-2.296	0.331	-0.252
18	-4.579	-2.703	-3.035	1.354
19	-0.689	-2.505	1.004	-0.376
20	0.499	-0.41	0.302	-1.091
21	-0.828	0.949	-1.346	-0.331
22	-0.728	-0.492	0.751	-0.241
23	-0.111	-0.745	0.615	-0.247
24	0.1	-0.179	-0.032	0.087
25	0.569	-1.131	0.049	-0.15
26	0.188	-0.923	-0.173	0.442

Standard thresholds

P-value	Threshold
0.001	-3.89134
0.0005	-2.02854
0.0001	1.91321