ZNF672.H13INVIVO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZNF672.H13INVIVO.0.PSG.A
Gene (human)	ZNF672 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf672
Gene synonyms (mouse)	Zfp672
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	18
Consensus	SdRvKRCWGGGGvvKKvv
GC content	70.47%
Information content (bits; total / per base)	14.508 / 0.806
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	254
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.864	0.864	0.811	0.811	0.877	0.877	32.658	32.658

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.999	0.999	0.998	0.998	0.988	0.986
GFPIVT, 1 experiments	best	0.999	0.999	0.998	0.998	0.988	0.986

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	445.745	0.944	0.921	0.854
overall, 3 experiments	best	806.347	0.968	0.932	0.879
Lysate, 2 experiments	median	42.461	0.65	0.662	0.65
Lysate, 2 experiments	best	58.585	0.741	0.744	0.752
GFPIVT, 1 experiments	median	782.377	0.961	0.921	0.873
GFPIVT, 1 experiments	best	806.347	0.968	0.932	0.879

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF689-like {2.3.3.66} (TFClass)
TFClass ID	TFClass: 2.3.3.66.2
HGNC	HGNC:26179
MGI	MGI:2442105
EntrezGene (human)	GeneID:79894 (SSTAR profile)
EntrezGene (mouse)	GeneID:319475 (SSTAR profile)
UniProt ID (human)	ZN672_HUMAN
UniProt ID (mouse)	ZN672_MOUSE
UniProt AC (human)	Q499Z4 (TFClass)
UniProt AC (mouse)	Q99LH4 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ZNF672.H13INVIVO.0.PSG.A.pcm
PWM	ZNF672.H13INVIVO.0.PSG.A.pwm
PFM	ZNF672.H13INVIVO.0.PSG.A.pfm
Threshold to P-value map	ZNF672.H13INVIVO.0.PSG.A.thr
Motif in other formats
JASPAR format	ZNF672.H13INVIVO.0.PSG.A_jaspar_format.txt
MEME format	ZNF672.H13INVIVO.0.PSG.A_meme_format.meme
Transfac format	ZNF672.H13INVIVO.0.PSG.A_transfac_format.txt
Homer format	ZNF672.H13INVIVO.0.PSG.A_homer_format_0.001.txt ZNF672.H13INVIVO.0.PSG.A_homer_format_0.0005.txt ZNF672.H13INVIVO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	15.0	179.0	33.0	27.0
02	68.0	15.0	127.0	44.0
03	35.0	24.0	188.0	7.0
04	100.0	102.0	45.0	7.0
05	19.0	25.0	174.0	36.0
06	49.0	8.0	192.0	5.0
07	3.0	241.0	5.0	5.0
08	199.0	16.0	7.0	32.0
09	1.0	0.0	252.0	1.0
10	31.0	3.0	214.0	6.0
11	28.0	6.0	218.0	2.0
12	23.0	11.0	215.0	5.0
13	96.0	52.0	95.0	11.0
14	74.0	96.0	52.0	32.0
15	9.0	17.0	38.0	190.0
16	13.0	18.0	183.0	40.0
17	50.0	59.0	123.0	22.0
18	47.0	143.0	46.0	18.0

PFM

	A	C	G	T
01	0.059	0.705	0.13	0.106
02	0.268	0.059	0.5	0.173
03	0.138	0.094	0.74	0.028
04	0.394	0.402	0.177	0.028
05	0.075	0.098	0.685	0.142
06	0.193	0.031	0.756	0.02
07	0.012	0.949	0.02	0.02
08	0.783	0.063	0.028	0.126
09	0.004	0.0	0.992	0.004
10	0.122	0.012	0.843	0.024
11	0.11	0.024	0.858	0.008
12	0.091	0.043	0.846	0.02
13	0.378	0.205	0.374	0.043
14	0.291	0.378	0.205	0.126
15	0.035	0.067	0.15	0.748
16	0.051	0.071	0.72	0.157
17	0.197	0.232	0.484	0.087
18	0.185	0.563	0.181	0.071

PWM

	A	C	G	T
01	-1.376	1.022	-0.635	-0.827
02	0.067	-1.376	0.682	-0.357
03	-0.578	-0.938	1.071	-2.046
04	0.446	0.466	-0.336	-2.046
05	-1.158	-0.9	0.994	-0.551
06	-0.253	-1.934	1.092	-2.319
07	-2.695	1.318	-2.319	-2.319
08	1.128	-1.317	-2.046	-0.665
09	-3.304	-3.847	1.362	-3.304
10	-0.695	-2.695	1.2	-2.173
11	-0.792	-2.173	1.218	-2.953
12	-0.979	-1.656	1.204	-2.319
13	0.406	-0.195	0.396	-1.656
14	0.15	0.406	-0.195	-0.665
15	-1.832	-1.261	-0.499	1.082
16	-1.506	-1.208	1.044	-0.45
17	-0.233	-0.072	0.651	-1.021
18	-0.293	0.8	-0.314	-1.208

Standard thresholds

P-value	Threshold
0.001	3.66486
0.0005	4.67351
0.0001	6.79511